File: qm9_pretrained_schnet.py

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import argparse
import os.path as osp

import torch
from tqdm import tqdm

from torch_geometric.datasets import QM9
from torch_geometric.loader import DataLoader
from torch_geometric.nn import SchNet

parser = argparse.ArgumentParser()
parser.add_argument('--cutoff', type=float, default=10.0,
                    help='Cutoff distance for interatomic interactions')
args = parser.parse_args()

path = osp.join(osp.dirname(osp.realpath(__file__)), '..', 'data', 'QM9')
dataset = QM9(path)

device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')

for target in range(12):
    model, datasets = SchNet.from_qm9_pretrained(path, dataset, target)
    train_dataset, val_dataset, test_dataset = datasets

    model = model.to(device)
    loader = DataLoader(test_dataset, batch_size=256)

    maes = []
    for data in tqdm(loader):
        data = data.to(device)
        with torch.no_grad():
            pred = model(data.z, data.pos, data.batch)
        mae = (pred.view(-1) - data.y[:, target]).abs()
        maes.append(mae)

    mae = torch.cat(maes, dim=0)

    # Report meV instead of eV.
    mae = 1000 * mae if target in [2, 3, 4, 6, 7, 8, 9, 10] else mae

    print(f'Target: {target:02d}, MAE: {mae.mean():.5f} ± {mae.std():.5f}')