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import os
import sys
from subprocess import check_output
if len(os.environ.get('COVERAGE', '')) > 0:
MACROS = [("CYTHON_TRACE", "1"), ("CYTHON_TRACE_NOGIL", "1")]
COMPILER_DIRECTIVES = {"linetrace": True}
print("-" * 80)
print("Enabling linetracing for cython and setting CYTHON_TRACE = 1")
print("-" * 80)
else:
MACROS = []
COMPILER_DIRECTIVES = {}
MODE = 'normal'
if len(sys.argv) >= 2 and \
('--help' in sys.argv[1:] or
sys.argv[1] in ('--help-commands', 'egg_info', '--version',
'clean', 'sdist')):
MODE = 'info'
HAVE_MPI = True
try:
import mpi4py
except ImportError:
HAVE_MPI = False
compiler = 'gcc'
# compiler = 'intel'
if compiler == 'intel':
extra_compile_args = ['-O3']
else:
extra_compile_args = []
def get_deps(*args):
"""Given a list of basenames, this checks if a .pyx or .pxd exists
and returns the list.
"""
result = []
for basename in args:
for ext in ('.pyx', '.pxd'):
f = basename + ext
if os.path.exists(f):
result.append(f)
return result
def get_zoltan_directory(varname):
global USE_ZOLTAN
d = os.environ.get(varname, '')
if len(d) == 0:
USE_ZOLTAN = False
return ''
else:
USE_ZOLTAN = True
if not os.path.exists(d):
print("*" * 80)
print("%s incorrectly set to %s, not using ZOLTAN!" % (varname, d))
print("*" * 80)
USE_ZOLTAN = False
return ''
return d
def get_mpi_flags():
"""Returns mpi_inc_dirs, mpi_compile_args, mpi_link_args.
"""
global HAVE_MPI
mpi_inc_dirs = []
mpi_compile_args = []
mpi_link_args = []
if not HAVE_MPI:
return mpi_inc_dirs, mpi_compile_args, mpi_link_args
try:
mpic = 'mpic++'
if compiler == 'intel':
link_args = check_output(
[mpic, '-cc=icc', '-link_info'], universal_newlines=True
).strip()
link_args = link_args[3:]
compile_args = check_output(
[mpic, '-cc=icc', '-compile_info'], universal_newlines=True
).strip()
compile_args = compile_args[3:]
else:
link_args = check_output(
[mpic, '--showme:link'], universal_newlines=True
).strip()
compile_args = check_output(
[mpic, '--showme:compile'], universal_newlines=True
).strip()
except: # noqa: E722
print('-' * 80)
print("Unable to run mpic++ correctly, skipping parallel build")
print('-' * 80)
HAVE_MPI = False
else:
mpi_link_args.extend(link_args.split())
mpi_compile_args.extend(compile_args.split())
mpi_inc_dirs.append(mpi4py.get_include())
return mpi_inc_dirs, mpi_compile_args, mpi_link_args
def get_zoltan_args():
"""Returns zoltan_include_dirs, zoltan_library_dirs
"""
global HAVE_MPI, USE_ZOLTAN
zoltan_include_dirs, zoltan_library_dirs = [], []
if not HAVE_MPI:
return zoltan_include_dirs, zoltan_library_dirs
# First try with the environment variable 'ZOLTAN'
zoltan_base = get_zoltan_directory('ZOLTAN')
inc = lib = ''
if len(zoltan_base) > 0:
inc = os.path.join(zoltan_base, 'include')
lib = os.path.join(zoltan_base, 'lib')
if not os.path.exists(inc) or not os.path.exists(lib):
inc = lib = ''
# try with the older ZOLTAN include directories
if len(inc) == 0 or len(lib) == 0:
inc = get_zoltan_directory('ZOLTAN_INCLUDE')
lib = get_zoltan_directory('ZOLTAN_LIBRARY')
if not USE_ZOLTAN:
# Try with default in sys.prefix/{include,lib}, this is what is done
# by any conda installs of zoltan.
inc = os.path.join(sys.prefix, 'include')
lib = os.path.join(sys.prefix, 'lib')
if os.path.exists(os.path.join(inc, 'zoltan.h')):
USE_ZOLTAN = True
if (not USE_ZOLTAN):
print("*" * 80)
print("Zoltan Environment variable not set, not using ZOLTAN!")
print("*" * 80)
HAVE_MPI = False
else:
print('-' * 70)
print("Using Zoltan from:\n%s\n%s" % (inc, lib))
print('-' * 70)
zoltan_include_dirs = [inc]
zoltan_library_dirs = [lib]
# PyZoltan includes
zoltan_cython_include = [os.path.abspath('./pyzoltan/czoltan')]
zoltan_include_dirs += zoltan_cython_include
# Not sure we need this but doing so just to be safe.
import cyarray
cyarray_include_dirs = [os.path.abspath(os.path.dirname(cyarray.__file__))]
zoltan_include_dirs += cyarray_include_dirs
return zoltan_include_dirs, zoltan_library_dirs
def get_parallel_extensions():
if not HAVE_MPI:
return []
if MODE == 'info':
from distutils.core import Extension
include_dirs = []
mpi_inc_dirs, mpi_compile_args, mpi_link_args = [], [], []
zoltan_include_dirs, zoltan_library_dirs = [], []
else:
from Cython.Distutils import Extension
import numpy
include_dirs = [numpy.get_include()]
mpi_inc_dirs, mpi_compile_args, mpi_link_args = get_mpi_flags()
zoltan_include_dirs, zoltan_library_dirs = get_zoltan_args()
# We should check again here as HAVE_MPI may be set to False when we try to
# get the MPI flags and are not successful.
if not HAVE_MPI:
return []
MPI4PY_V2 = False if mpi4py.__version__.startswith('1.') else True
cython_compile_time_env = {'MPI4PY_V2': MPI4PY_V2}
zoltan_lib = 'zoltan'
if os.environ.get('USE_TRILINOS', None) is not None:
zoltan_lib = 'trilinos_zoltan'
zoltan_modules = [
Extension(
name="pyzoltan.core.zoltan",
sources=["pyzoltan/core/zoltan.pyx"],
depends=get_deps(
"pyzoltan/czoltan/czoltan",
"pyzoltan/czoltan/czoltan_types",
),
include_dirs=include_dirs + zoltan_include_dirs + mpi_inc_dirs,
library_dirs=zoltan_library_dirs,
libraries=[zoltan_lib, 'mpi'],
extra_link_args=mpi_link_args,
extra_compile_args=mpi_compile_args + extra_compile_args,
cython_compile_time_env=cython_compile_time_env,
language="c++",
define_macros=MACROS,
),
Extension(
name="pyzoltan.core.zoltan_dd",
sources=["pyzoltan/core/zoltan_dd.pyx"],
depends=get_deps(
"pyzoltan/core/carray",
"pyzoltan/czoltan/czoltan_dd",
"pyzoltan/czoltan/czoltan_types"
),
include_dirs=include_dirs + zoltan_include_dirs + mpi_inc_dirs,
library_dirs=zoltan_library_dirs,
libraries=[zoltan_lib, 'mpi'],
extra_link_args=mpi_link_args,
extra_compile_args=mpi_compile_args + extra_compile_args,
cython_compile_time_env=cython_compile_time_env,
language="c++",
define_macros=MACROS,
),
Extension(
name="pyzoltan.core.zoltan_comm",
sources=["pyzoltan/core/zoltan_comm.pyx"],
depends=get_deps(
"pyzoltan/core/carray",
"pyzoltan/czoltan/zoltan_comm"
),
include_dirs=include_dirs + zoltan_include_dirs + mpi_inc_dirs,
library_dirs=zoltan_library_dirs,
libraries=[zoltan_lib, 'mpi'],
extra_link_args=mpi_link_args,
extra_compile_args=mpi_compile_args + extra_compile_args,
cython_compile_time_env=cython_compile_time_env,
language="c++",
define_macros=MACROS,
),
]
return zoltan_modules
def _is_cythonize_default():
import warnings
result = True
with warnings.catch_warnings():
warnings.simplefilter("ignore")
try:
# old_build_ext was introduced in Cython 0.25 and this is when
# cythonize was made the default.
from Cython.Distutils import old_build_ext # noqa: F401
except ImportError:
result = False
return result
def setup_package():
from setuptools import find_packages, setup
if MODE == 'info':
cmdclass = {}
else:
from Cython.Distutils import build_ext
cmdclass = {'build_ext': build_ext}
# Extract the version information from pysph/__init__.py
info = {}
module = os.path.join('pyzoltan', '__init__.py')
exec(compile(open(module).read(), module, 'exec'), info)
# The requirements.
install_requires = [
'cyarray', 'numpy', 'Cython>=0.20', 'setuptools>=6.0', 'mpi4py>=1.2',
'pytest>=3.0'
]
ext_modules = get_parallel_extensions()
if MODE != 'info' and _is_cythonize_default():
# Cython >= 0.25 uses cythonize to compile the extensions. This
# requires the compile_time_env to be set explicitly to work.
compile_env = {}
include_path = set()
if HAVE_MPI:
MPI4PY_V2 = False if mpi4py.__version__.startswith('1.') else True
compile_env.update({'MPI4PY_V2': MPI4PY_V2})
for mod in ext_modules:
compile_env.update(mod.cython_compile_time_env or {})
include_path.update(mod.include_dirs)
from Cython.Build import cythonize
ext_modules = cythonize(
ext_modules, compile_time_env=compile_env,
include_path=list(include_path),
compiler_directives=COMPILER_DIRECTIVES,
)
if len(ext_modules) == 0:
raise RuntimeError(
'There are no extension modules, Nothing to do!'
)
setup(name='PyZoltan',
version=info['__version__'],
author='PySPH Developers',
author_email='pysph-dev@googlegroups.com',
description='Wrapper for the Zoltan data management library',
long_description=open('README.rst').read(),
url='http://github.com/pypr/pyzoltan',
license="BSD",
keywords="Cython Zoltan Dynamic load balancing",
packages=find_packages(),
package_data={
'': ['*.pxd', '*.mako', '*.rst'],
'pyzoltan.core.tests': ['mesh.txt'],
},
# exclude package data in installation.
exclude_package_data={
'': ['Makefile', '*.bat', '*.cfg', '*.rst', '*.sh', '*.yml'],
},
ext_modules=ext_modules,
include_package_data=True,
cmdclass=cmdclass,
install_requires=install_requires,
zip_safe=False,
platforms=['Linux', 'Mac OS-X', 'Unix', 'Windows'],
classifiers=[c.strip() for c in """\
Development Status :: 5 - Production/Stable
Environment :: Console
Intended Audience :: Developers
Intended Audience :: Science/Research
License :: OSI Approved :: BSD License
Natural Language :: English
Operating System :: MacOS :: MacOS X
Operating System :: Microsoft :: Windows
Operating System :: POSIX
Operating System :: Unix
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Physics
Topic :: Software Development :: Libraries
""".splitlines() if len(c.split()) > 0],
)
if __name__ == '__main__':
setup_package()
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