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|
{% extends "base.html" %}
{% block content %}
<div class="row">
<div class="col-lg-6">
<h3>Sequence Length Statistics</h3>
<p>
<a class="btn btn-default" href="descriptive_stats.tsv" target="_blank" rel="noopener noreferrer">
Download sequence-length statistics as a TSV
</a>
</p>
<table class="table table-striped" id="stats_table">
<thead>
<tr>
<th>Sequence Count</th>
<th>Min Length</th>
<th>Max Length</th>
<th>Mean Length</th>
<th>Range</th>
<th>Standard Deviation</th>
</tr>
</thead>
<tbody>
<tr>
<td>{{ stats.count }}</td>
<td>{{ stats.min | int }}</td>
<td>{{ stats.max | int }}</td>
<td>{{ stats.mean | round(2, 'common') }}</td>
<td>{{ stats.range | int }}</td>
<td>{{ stats.std | round(2, 'common') }}</td>
</tr>
</tbody>
</table>
</div>
<div class="col-lg-6">
<h3>Seven-Number Summary of Sequence Lengths</h3>
<p>
<a class="btn btn-default" href="seven_number_summary.tsv" target="_blank" rel="noopener noreferrer">
Download seven-number summary as a TSV
</a>
</p>
<table class="table table-striped" id="summary_table">
<thead>
<tr>
<th>Percentile:</th>
{% for percentile in stats.seven_num_summ_percentiles %}
<th>{{ (percentile*100) | int }}%</th>
{% endfor %}
</tr>
</thead>
<tbody>
<tr>
<td>Length* (nts):</td>
{% for value in stats.seven_num_summ_values %}
<td>{{ value | int }}</td>
{% endfor %}
</tr>
</tbody>
</table>
</div>
</div>
<div class="row">
<div class="col-lg-6">
</div>
<div class="col-lg-6">
<p>
*Values rounded down to nearest whole number.
</p>
</div>
</div>
<div class="row">
<div class="col-lg-12">
<h3>Sequence Table</h3>
<p>
To BLAST a sequence against the NCBI nt database, click the
sequence and then click the <i>View report</i>
button on the resulting page.
<p>
<a class="btn btn-default" href="sequences.fasta" target="_blank" rel="noopener noreferrer">
Download your sequences as a raw FASTA file
</a>
</p>
<p>
<i>Click on a Column header to sort the table.</i>
</p>
<table class="table table-striped table-hover" id="seq_table">
<thead>
<tr>
<th>Feature ID</th>
<th data-tsorter="numeric">Sequence Length</th>
<th data-tsorter="link">Sequence</th>
</tr>
</thead>
<tbody>
{% for sequence in data %}
<tr>
<td>{{ sequence.id }}</td>
<td>{{ sequence.len }}</td>
<td><samp><a target="_blank" href="{{ sequence.url }}" rel="noopener noreferrer">{{ sequence.seq }}</a></samp></td>
</tr>
{% endfor %}
</tbody>
</table>
</div>
</div>
<script src="./js/tsorter.min.js" type="text/javascript"></script>
<script type="text/javascript">
function init() {
var sorter = tsorter.create('seq_table');
}
window.onload = init;
</script>
<style media="screen">
#seq_table th.descend:after{
content: "\25B2";
}
#seq_table th.ascend:after{
content: "\25BC";
}
</style>
{% endblock %}
|
