File: sepp_not_in_testing.patch

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q2-fragment-insertion 2022.11.1-3
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Description: Skip autopkgtest requiring sepp which needs pplacer which is not
    available in testing since mcl lost OCaml support
Author: Andreas Tille <tille@debian.org>
Last-Update: Tue, 17 Jan 2023 11:36:48 +0100

--- a/q2_fragment_insertion/tests/test_insertion.py
+++ b/q2_fragment_insertion/tests/test_insertion.py
@@ -19,8 +19,9 @@ from qiime2.sdk import Artifact
 from qiime2.plugin.testing import TestPluginBase
 
 from q2_types.feature_data import DNAIterator
+import pytest
 
-
+@pytest.mark.skip("sepp is not in testing any more since pplacer is lost due to ocaml bindings missing in latest mcl")
 class TestSepp(TestPluginBase):
     package = 'q2_fragment_insertion.tests'