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# ----------------------------------------------------------------------------
# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ----------------------------------------------------------------------------
from setuptools import setup, find_packages
import versioneer
setup(
name="q2-types",
version=versioneer.get_version(),
cmdclass=versioneer.get_cmdclass(),
packages=find_packages(),
author="Greg Caporaso",
author_email="gregcaporaso@gmail.com",
description="Common QIIME 2 semantic types.",
license='BSD-3-Clause',
url="https://qiime2.org",
entry_points={
'qiime2.plugins':
['q2-types=q2_types.plugin_setup:plugin']
},
package_data={
'q2_types': ['citations.bib'],
'q2_types.tests': ['data/*'],
'q2_types.distance_matrix.tests': ['data/*'],
'q2_types.feature_data.tests': ['data/*',
'data/taxonomy/*',
'data/emp_multiplexed/*',
'data/emp_multiplexed_single_end/*'],
'q2_types.feature_map.tests': ['data/*'],
'q2_types.feature_table.tests': ['data/*'],
'q2_types.metadata.tests': ['data/*'],
'q2_types.multiplexed_sequences.tests': [
'data/*',
'data/absolute_manifests_v2/*'
],
'q2_types.ordination.tests': ['data/*'],
'q2_types.per_sample_sequences.tests':
['data/*',
'data/paired_end_data/*',
'data/paired_end_data_numeric/*',
'data/single_end_data/*',
'data/absolute_manifests/*',
'data/absolute_manifests_v2/*',
'data/relative_manifests/*',
'data/qiime1-demux-format/*',
'data/single-end-two-sample-data1/*',
'data/single-end-two-sample-data2/*',
'data/single-end-two-sample-data3/*',
'data/mags/*/*', 'data/mags/*/*/*',
'data/manifests/*', 'data/contigs/*',
'data/diamond_hit/*',
'data/bowtie/*/*',
'data/bowtie/*/*/*/*',
'data/bowtie/*/*/*',
'data/error_correction_details/*'],
'q2_types.sample_data.tests': ['data/*'],
'q2_types.tree.tests': ['data/*'],
'q2_types.feature_data_mag.tests':
['data/*', 'data/*/*',
'data/mags-fa/*', 'data/mags-fasta/*'],
'q2_types.genome_data.tests':
['data/*/',
'data/genes/*',
'data/loci-invalid/*',
'data/loci/*',
'data/ortholog/*',
'data/proteins/*',
],
'q2_types.kraken2.tests': [
'data/*',
'data/kraken2-db/*',
'data/bracken-db/*',
'data/outputs-single/*',
'data/outputs-reads/*/*',
'data/outputs-contigs/*',
'data/outputs-mags/*/*',
'data/reports-single/*',
'data/reports-reads/*/*',
'data/reports-mags/*/*',
'data/db-reports/**/*'
],
'q2_types.kaiju.tests':
['data/*', 'data/db-valid/*'],
'q2_types.reference_db.tests':
['data/*', 'data/*/*', 'data/*/*/*'],
},
zip_safe=False,
)
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