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Source: qcat
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3,
python3-setuptools,
python3-pytest-runner <!nocheck>,
python3-pytest <!nocheck>,
python3-pytest-cov <!nocheck>,
python3-biopython <!nocheck>,
python3-parasail <!nocheck>,
python3-yaml <!nocheck>
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/qcat
Vcs-Git: https://salsa.debian.org/med-team/qcat.git
Homepage: https://github.com/nanoporetech/qcat
Rules-Requires-Root: no
Package: qcat
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
python3-biopython,
python3-parasail,
python3-yaml
Suggests: qcat-examples
Description: demultiplexing Oxford Nanopore reads from FASTQ files
Qcat is a command-line tool for demultiplexing Oxford Nanopore reads
from FASTQ files. It accepts basecalled FASTQ files and splits the reads
into separate FASTQ files based on their barcode. Qcat makes the
demultiplexing algorithms used in albacore/guppy and EPI2ME available to
be used locally with FASTQ files. Currently qcat implements the EPI2ME
algorithm.
Package: qcat-examples
Architecture: all
Depends: ${misc:Depends},
python3-pytest,
python3-pytest-runner,
python3-pytest-cov
Enhances: qcat
Description: demultiplexing Oxford Nanopore reads from FASTQ files (examples)
Qcat is a command-line tool for demultiplexing Oxford Nanopore reads
from FASTQ files. It accepts basecalled FASTQ files and splits the reads
into separate FASTQ files based on their barcode. Qcat makes the
demultiplexing algorithms used in albacore/guppy and EPI2ME available to
be used locally with FASTQ files. Currently qcat implements the EPI2ME
algorithm.
.
This package contains examples to test qcat.
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