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name: qcumber
channels:
- bioconda
- johanneskoester
- r
- conda-forge
- ostrokach
dependencies:
- R=3.3
- bioconductor-biocinstaller
- bioconductor-savr
- bitstring
- bowtie2=2.3
- dwgsim
- docopt
- fastqc=0.11
- gcc
- gzip
- jinja2
- kraken=0.10
- krona
- matplotlib=2.0
- numpy
- pandas>=0.19
- python=3.6
- pyyaml=3.12
- r-ggplot2=2.2.1
- r-quantreg
- r-reshape2
- r-stringi
- samtools=1.3
- seaborn
- trimmomatic=0.36
- xmltodict
- snakemake=4.8
- glob2
# - pip:
# - snakemake<=4.8
# - glob2
|
