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qiime 1.8.0%2Bdfsg-4
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 130,508 kB
  • ctags: 10,145
  • sloc: python: 110,826; haskell: 379; sh: 169; makefile: 125

Folder: tests

d .. (parent)
d d rwxr-xr-x 4,096 test_denoiser
d d rwxr-xr-x 4,096 test_parallel
d d rwxr-xr-x 4,096 test_pycogent_backports
d d rwxr-xr-x 4,096 test_support_files
d d rwxr-xr-x 4,096 test_workflow
- - rw-r--r-- 512 __init__.py
- - rwxr-xr-x 6,444 all_tests.py
- - rwxr-xr-x 12,394 test_add_alpha_to_mapping_file.py
- - rwxr-xr-x 9,685 test_add_qiime_labels.py
- - rwxr-xr-x 2,385 test_adjust_seq_orientation.py
- - rw-r--r-- 15,830 test_align_seqs.py
- - rw-r--r-- 8,041 test_alpha_diversity.py
- - rw-r--r-- 96,539 test_assign_taxonomy.py
- - rw-r--r-- 2,459 test_barcode.py
- - rw-r--r-- 18,729 test_beta_diversity.py
- - rw-r--r-- 10,583 test_beta_metrics.py
- - rwxr-xr-x 7,892 test_biplots.py
- - rwxr-xr-x 2,252 test_categorized_dist_scatterplot.py
- - rwxr-xr-x 3,582 test_clean_raxml_parsimony_tree.py
- - rw-r--r-- 1,109 test_cluster_quality.py
- - rw-r--r-- 979 test_collate_alpha.py
- - rw-r--r-- 13,889 test_colors.py
- - rwxr-xr-x 19,581 test_compare_alpha_diversity.py
- - rw-r--r-- 13,446 test_compare_categories.py
- - rw-r--r-- 13,583 test_compare_distance_matrices.py
- - rw-r--r-- 58,486 test_compare_taxa_summaries.py
- - rwxr-xr-x 53,234 test_convert_fastaqual_fastq.py
- - rwxr-xr-x 4,281 test_core_microbiome.py
- - rwxr-xr-x 87,391 test_demultiplex_fasta.py
- - rw-r--r-- 283,007 test_denoise_wrapper.py
- - rw-r--r-- 6,331 test_detrend.py
- - rw-r--r-- 6,487 test_distance_matrix_from_mapping.py
- - rw-r--r-- 21,821 test_estimate_observation_richness.py
- - rw-r--r-- 15,042 test_exclude_seqs_by_blast.py
- - rw-r--r-- 27,352 test_extract_barcodes.py
- - rwxr-xr-x 169,266 test_filter.py
- - rwxr-xr-x 34,000 test_filter_alignment.py
- - rw-r--r-- 2,483 test_filter_otus_by_sample.py
- - rwxr-xr-x 54,884 test_format.py
- - rw-r--r-- 15,203 test_golay.py
- - rwxr-xr-x 37,318 test_group.py
- - rwxr-xr-x 3,849 test_hamming.py
- - rw-r--r-- 2,354 test_hierarchical_cluster.py
- - rwxr-xr-x 67,716 test_identify_chimeric_seqs.py
- - rwxr-xr-x 4,158 test_insert_seqs_into_tree.py
- - rw-r--r-- 47,139 test_join_paired_ends.py
- - rw-r--r-- 7,925 test_longitudinal_otu_category_significance.py
- - rw-r--r-- 12,308 test_make_2d_plots.py
- - rwxr-xr-x 245,304 test_make_3d_plots.py
- - rwxr-xr-x 27,764 test_make_bipartite_network.py
- - rw-r--r-- 2,665 test_make_bootstrapped_tree.py
- - rw-r--r-- 11,991 test_make_distance_boxplots.py
- - rw-r--r-- 38,610 test_make_distance_histograms.py
- - rw-r--r-- 6,098 test_make_fastq.py
- - rw-r--r-- 1,798 test_make_library_id_lists.py
- - rw-r--r-- 6,176 test_make_otu_heatmap.py
- - rw-r--r-- 10,153 test_make_otu_heatmap_html.py
- - rw-r--r-- 17,957 test_make_otu_network.py
- - rw-r--r-- 3,803 test_make_otu_table.py
- - rw-r--r-- 6,675 test_make_per_library_sff.py
- - rw-r--r-- 5,010 test_make_phylogeny.py
- - rwxr-xr-x 26,672 test_make_rarefaction_plots.py
- - rwxr-xr-x 23,852 test_map_reads_to_reference.py
- - rwxr-xr-x 5,487 test_merge_mapping_files.py
- - rwxr-xr-x 50,027 test_otu_significance.py
- - rw-r--r-- 63,890 test_parse.py
- - rwxr-xr-x 181,744 test_pick_otus.py
- - rw-r--r-- 19,269 test_pick_rep_set.py
- - rwxr-xr-x 9,075 test_plot_rank_abundance_graph.py
- - rw-r--r-- 6,864 test_plot_semivariogram.py
- - rw-r--r-- 16,530 test_plot_taxa_summary.py
- - rw-r--r-- 797 test_principal_coordinates.py
- - rw-r--r-- 16,757 test_process_sff.py
- - rwxr-xr-x 1,952 test_quality.py
- - rwxr-xr-x 13,097 test_quality_scores_plot.py
- - rw-r--r-- 6,326 test_rarefaction.py
- - rw-r--r-- 6,744 test_relatedness.py
- - rw-r--r-- 8,304 test_remote.py
- - rw-r--r-- 4,089 test_shared_phylotypes.py
- - rwxr-xr-x 94,887 test_simsam.py
- - rwxr-xr-x 19,793 test_sort.py
- - rwxr-xr-x 13,685 test_split.py
- - rw-r--r-- 82,885 test_split_libraries.py
- - rwxr-xr-x 58,683 test_split_libraries_fastq.py
- - rw-r--r-- 82,835 test_stats.py
- - rwxr-xr-x 15,297 test_submit_to_mgrast.py
- - rw-r--r-- 7,210 test_summarize_taxa.py
- - rw-r--r-- 27,787 test_supervised_learning.py
- - rwxr-xr-x 12,850 test_transform_coordinate_matrices.py
- - rw-r--r-- 6,109 test_tree_compare.py
- - rw-r--r-- 4,235 test_trim_sff_primers.py
- - rwxr-xr-x 15,371 test_truncate_fasta_qual_files.py
- - rwxr-xr-x 15,014 test_truncate_reverse_primer.py
- - rwxr-xr-x 112,682 test_util.py
- - rwxr-xr-x 20,344 test_validate_demultiplexed_fasta.py
- - rwxr-xr-x 79,388 test_validate_mapping_file.py