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qiime 1.9.1+dfsg-3
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  • area: main
  • in suites: sid
  • size: 114,512 kB
  • sloc: python: 109,265; haskell: 379; makefile: 127; sh: 107

Folder: tests

d .. (parent)
d d rwxr-xr-x 4,096 test_denoiser
d d rwxr-xr-x 4,096 test_parallel
d d rwxr-xr-x 4,096 test_support_files
d d rwxr-xr-x 4,096 test_workflow
- - rw-r--r-- 694 __init__.py
- - rwxr-xr-x 6,506 all_tests.py
- - rwxr-xr-x 14,304 test_add_alpha_to_mapping_file.py
- - rwxr-xr-x 9,146 test_add_qiime_labels.py
- - rwxr-xr-x 2,310 test_adjust_seq_orientation.py
- - rw-r--r-- 16,654 test_align_seqs.py
- - rw-r--r-- 9,716 test_alpha_diversity.py
- - rw-r--r-- 117,171 test_assign_taxonomy.py
- - rw-r--r-- 2,494 test_barcode.py
- - rw-r--r-- 12,791 test_beta_diversity.py
- - rw-r--r-- 11,747 test_beta_metrics.py
- - rwxr-xr-x 7,729 test_biplots.py
- - rwxr-xr-x 2,336 test_categorized_dist_scatterplot.py
- - rwxr-xr-x 3,443 test_clean_raxml_parsimony_tree.py
- - rw-r--r-- 1,143 test_cluster_quality.py
- - rw-r--r-- 984 test_collate_alpha.py
- - rw-r--r-- 14,626 test_colors.py
- - rwxr-xr-x 20,599 test_compare_alpha_diversity.py
- - rw-r--r-- 13,642 test_compare_categories.py
- - rw-r--r-- 14,521 test_compare_distance_matrices.py
- - rw-r--r-- 55,828 test_compare_taxa_summaries.py
- - rw-r--r-- 14,262 test_compare_trajectories.py
- - rw-r--r-- 2,022 test_compute_taxonomy_ratios.py
- - rwxr-xr-x 52,106 test_convert_fastaqual_fastq.py
- - rwxr-xr-x 4,213 test_core_microbiome.py
- - rwxr-xr-x 90,850 test_demultiplex_fasta.py
- - rw-r--r-- 282,987 test_denoise_wrapper.py
- - rw-r--r-- 6,325 test_detrend.py
- - rw-r--r-- 38,712 test_differential_abundance.py
- - rw-r--r-- 8,325 test_distance_matrix_from_mapping.py
- - rw-r--r-- 26,868 test_estimate_observation_richness.py
- - rw-r--r-- 14,438 test_exclude_seqs_by_blast.py
- - rw-r--r-- 29,373 test_extract_barcodes.py
- - rwxr-xr-x 176,158 test_filter.py
- - rwxr-xr-x 33,954 test_filter_alignment.py
- - rw-r--r-- 2,629 test_filter_otus_by_sample.py
- - rwxr-xr-x 44,936 test_format.py
- - rw-r--r-- 15,475 test_golay.py
- - rwxr-xr-x 51,901 test_group.py
- - rwxr-xr-x 3,884 test_hamming.py
- - rw-r--r-- 2,337 test_hierarchical_cluster.py
- - rwxr-xr-x 68,058 test_identify_chimeric_seqs.py
- - rw-r--r-- 47,081 test_join_paired_ends.py
- - rw-r--r-- 13,513 test_make_2d_plots.py
- - rwxr-xr-x 27,926 test_make_bipartite_network.py
- - rw-r--r-- 2,571 test_make_bootstrapped_tree.py
- - rw-r--r-- 13,958 test_make_distance_boxplots.py
- - rw-r--r-- 6,151 test_make_fastq.py
- - rw-r--r-- 1,945 test_make_library_id_lists.py
- - rw-r--r-- 6,616 test_make_otu_heatmap.py
- - rw-r--r-- 17,949 test_make_otu_network.py
- - rw-r--r-- 4,742 test_make_otu_table.py
- - rw-r--r-- 6,639 test_make_per_library_sff.py
- - rw-r--r-- 4,567 test_make_phylogeny.py
- - rwxr-xr-x 28,160 test_make_rarefaction_plots.py
- - rwxr-xr-x 24,122 test_map_reads_to_reference.py
- - rw-r--r-- 17,841 test_normalize_table.py
- - rwxr-xr-x 62,760 test_otu_significance.py
- - rw-r--r-- 71,767 test_parse.py
- - rwxr-xr-x 215,328 test_pick_otus.py
- - rw-r--r-- 20,040 test_pick_rep_set.py
- - rwxr-xr-x 6,677 test_plot_rank_abundance_graph.py
- - rw-r--r-- 12,513 test_plot_semivariogram.py
- - rw-r--r-- 16,569 test_plot_taxa_summary.py
- - rw-r--r-- 882 test_principal_coordinates.py
- - rw-r--r-- 16,599 test_process_sff.py
- - rwxr-xr-x 12,535 test_quality_scores_plot.py
- - rw-r--r-- 6,157 test_rarefaction.py
- - rw-r--r-- 7,584 test_relatedness.py
- - rw-r--r-- 8,423 test_remote.py
- - rw-r--r-- 4,496 test_shared_phylotypes.py
- - rwxr-xr-x 96,314 test_simsam.py
- - rwxr-xr-x 20,300 test_sort.py
- - rwxr-xr-x 9,857 test_split.py
- - rw-r--r-- 87,669 test_split_libraries.py
- - rwxr-xr-x 96,684 test_split_libraries_fastq.py
- - rw-r--r-- 24,308 test_split_libraries_lea_seq.py
- - rw-r--r-- 101,460 test_stats.py
- - rw-r--r-- 7,131 test_summarize_taxa.py
- - rw-r--r-- 28,690 test_supervised_learning.py
- - rwxr-xr-x 14,665 test_transform_coordinate_matrices.py
- - rw-r--r-- 6,435 test_tree_compare.py
- - rw-r--r-- 4,265 test_trim_sff_primers.py
- - rwxr-xr-x 15,109 test_truncate_fasta_qual_files.py
- - rwxr-xr-x 15,527 test_truncate_reverse_primer.py
- - rwxr-xr-x 106,929 test_util.py
- - rwxr-xr-x 20,768 test_validate_demultiplexed_fasta.py
- - rwxr-xr-x 84,974 test_validate_mapping_file.py