1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
#!/bin/sh
#
# Added by Tim Booth <tbooth@ceh.ac.uk>
# QIIME wants very much to use the USEARCH binary, but this is not free software.
# However, it is available right now free-of-charge if you only want the
# 32-bit version.
# Redistribution requires a licence, which I could apply for, but then nobody
# but me can redistribute BL, which is no good!
# See if usearch.real is available anywhere
if which usearch.real >/dev/null ; then
exec usearch.real "$@"
fi
echo """\r\
USEARCH is not freely redistributable and is thus not included in the
default QIIME package. The free VSEARCH will be used in place of USEARCH
where possible, but this does not produce identical results.
You may obtain a personal copy of the 32-bit USEARCH at no charge.
To use this feature, please go to:
http://www.drive5.com/usearch/download.html
Download USEARCH v5.2.236, then:
sudo mv usearch* /usr/local/bin/usearch
sudo chmod a+x /usr/local/bin/usearch
You probably also want to install USEARCH 6.1 as /usr/local/bin/usearch61
"""
exit 1
|
