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/**********************************************************************
* File: sequence.h
* Author: Kevin Howe
* Copyright (C) Genome Research Limited, 2002-
*-------------------------------------------------------------------
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
* http://www.apache.org/licenses/LICENSE-2.0
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*-------------------------------------------------------------------
* NOTES:
* Functions and structures for the manipulation of protein
* sequences. Only minimal functionality is needed
**********************************************************************/
#ifndef _SEQUENCE
#define _SEQUENCE
#include <string.h>
#include "util.h"
#define MAX_NAME_LENGTH 25
/******************* structure definitions ****************************/
struct Sequence {
unsigned int length;
char *name;
char *seq;
char *sec_struct;
char *surf_acc;
char *trans_mem;
char *post_prob;
char *lig_bind;
};
/********************** function prototypes ***************************/
/**********************************************************************
FUNCTION: clone_Sequence
DESCRIPTION:
Performs a deep copy of the given Sequence and returns it
ARGS:
A Sequenced pointer (sequence.h)
RETURNS:
A pointer to a Sequence structure
NOTES:
**********************************************************************/
struct Sequence *clone_Sequence( struct Sequence *);
/**********************************************************************
FUNCTION: empty_Sequence
DESCRIPTION:
Creates and returns an new, empty Sequence object
ARGS:
RETURNS:
A pointer to a Sequence structure
NOTES:
**********************************************************************/
struct Sequence *empty_Sequence( void );
/**********************************************************************
FUNCTION: free_Sequence
DESCRIPTION:
frees the memory occupied by the given Sequence reference
ARGS:
A pointer to a struct Sequence
RETURNS:
The NULL pointer
NOTES:
**********************************************************************/
void *free_Sequence( struct Sequence *);
#endif
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