b37182d0f722df4c8d879863b335b6d7 *DESCRIPTION
f8872bd296af8e091912627066040d2c *NAMESPACE
ff593b4adda8e76ef34cc3a87ba42965 *R/ACCNUMStats.R
d9c59dccaf3d2547c52ac99fe93389cd *R/AllGenerics.R
de8aa60168ca07f103bbae7252431bb1 *R/Amat.R
dda286d949b7b780b75b933dedd2a398 *R/AnnMaps.R
976df258bab2be04220de493df9e945e *R/GOhelpers.R
9c9f5ee0f64cf9950be87c3590729160 *R/LL2homology.R
3137cffd95c991121660ebe3b1f7750f *R/blastSequences.R
15fbc1cd4223d26e0e1c5c4656dc2018 *R/chromLocation.R
ae0d6d23baf90ab3041728da3772da3e *R/compatipleVersions.R
498cceae27ac8402a0659f2bd9cf6631 *R/findNeighbors.R
29460b0200bb47ccc4e74880b8ce61aa *R/getData.R
45b33c768b91aa977822c08d79e8ac52 *R/getPMInfo.R
f33e325fe533a6a235138efa1597a220 *R/getSeq4ACC.R
f4f4552169c7f4d815d5949a4871b695 *R/homoData.R
1334190c7dd851ce6243fb6e9224d0ff *R/html.R
4a631853a9c4eb9700f380bc972b0c6d *R/isValidKey.R
c05be119905eaef4c8d814e54dcdca87 *R/pmid2MIAME.R
03e591e24b6068b94da95bb491973246 *R/probesByLL.R
19cf6d86435444ebd691c3e6f458e81f *R/pubMedAbst.R
9e0e773cccd22155b01cb6a88a38c48a *R/query.R
3a27d41be16e5fe5c757784efebf2b03 *R/readGEOAnn.R
b71d704bcbe6394b17b4df7087b5975b *R/serializeEnv.R
87734e291470476bf574e0c0ff13d86e *R/test_annotate_package.R
6992f93453563364f8a3ee5f316084ab *R/zzz.R
586c622b7eddfdaaa4b3974e9eefc811 *TODO
fe343e5a95340647d6d0abd02368057f *build/vignette.rds
8597a7acf4f7f913ddb7c90218d7829a *data/hgByChroms.rda
31b7c24f489c1b3b7bb45d213db3c7f9 *data/hgCLengths.rda
e2712357fb3445658c380ac359f8a2d5 *data/hgu95AProbLocs.rda
17d4dcba9b4fd0e63e787daadf1b9da6 *data/hgu95Achroloc.rda
14cf75083a3ea33d69d28a2ca24b5ca7 *data/hgu95Achrom.rda
dcfae9088e839b8a5a007c2abcaf88dd *data/hgu95All.rda
5526b7a618b797abe73daebfd326ddd6 *data/hgu95Asym.rda
4f7f01932d61acba1c5984f3c4931a44 *inst/NEWS.Rd
216923ccff37967e81d0ce25fdeb10d3 *inst/doc/GOusage.R
db53911202fb912a33eda346576c96c9 *inst/doc/GOusage.Rnw
83a2554b615861fe2e9dddae1c8c5d3d *inst/doc/GOusage.pdf
71f45cea999499835b70f8de4dd64858 *inst/doc/annotate.R
2db4a7d3fa4b1b1fb4ef3c35cb00f8bd *inst/doc/annotate.Rnw
851ecee3bd2782b88d4112e21ee3acab *inst/doc/annotate.pdf
7a54f536f9a5932a30b25fdd88b41aaf *inst/doc/chromLOC.R
e35b4b6a5ab993eeacde2254f0fa26ff *inst/doc/chromLOC.Rmd
115bc8d0fa8df15d36ccbde06b687151 *inst/doc/chromLOC.html
8981753fe39eb744b6296056ad4ffde6 *inst/doc/prettyOutput.R
e381a16428404ea7a90406018e9da098 *inst/doc/prettyOutput.Rnw
acfc4a0ed8a64e7240edfffe24dfc3d3 *inst/doc/prettyOutput.pdf
dd54c5152ec1b43cbf2949e97ffa0d9e *inst/doc/query.R
afdc3af240364d8c7ef543fd59e04e03 *inst/doc/query.Rnw
e66cf8c1c981734a46b90cb2833ca39d *inst/doc/query.pdf
2189c1fe4005a62c7ce28709ee8149b3 *inst/doc/useDataPkgs.R
5e70bf84387d3971082fc7de205af871 *inst/doc/useDataPkgs.Rmd
27296a5421d7ce699c684015d82e527d *inst/doc/useDataPkgs.html
123b5102e85adf25844470d1625255e5 *inst/doc/useProbeInfo.R
c63fb21baaa4f474835f94ee62e11024 *inst/doc/useProbeInfo.Rnw
98c1dd1e9b79ab0f26bee84ddc9b55f5 *inst/doc/useProbeInfo.pdf
7d94b17568fdeeca9b2743f5983f8e5f *inst/misc/demowrite.html
876eb28ff7f9b89b581eaace73ab54cb *inst/misc/pmLinkGen.Rnw
5235730c086d0d6fd44be4d65170fa85 *inst/misc/pmLinkGen.pdf
43805fcb0f9e2e37229a933dbcc647c1 *inst/unitTests/test_getAnnMap.R
d4931bba37df6bb8fc7294c461fe4e7e *man/ACCNUMStats.Rd
c759791a8b2b263552a5b3eb9970b1a5 *man/GO2heatmap.Rd
15db96e0f062d7cc80a4879e383aad7c *man/GOmnplot.Rd
28f081e04ecb8053c4f8b5f6f2350286 *man/HTMLPage-class.Rd
42492c9d87092e8c65afe04ab24e798b *man/LL2homology.Rd
5c9d706af1f9432b1f67db0cbaeb2070 *man/PMIDAmat.Rd
783b69450565f4773cb5eb476e45e5eb *man/PWAmat.Rd
8776502509ce6f7dfdc7f75d08e86e18 *man/UniGeneQuery.Rd
b394cbc64b6ed90452a4a076534cdaee *man/accessionToUID.Rd
dc82f86a1a29281f5262fdb9e920ecc4 *man/annPkgName.Rd
99acc2548b85313b6157d1e8cb36132f *man/annotate-defunct.Rd
3526612230d2e3e9dfbaaf02c16fc904 *man/aqListGOIDs.Rd
2e044182ba280e70f11f638f2efa1945 *man/blastSequences.Rd
0f11253dc6b82ddf4f1e79cf3a7be608 *man/buildChromLocation.Rd
7cb12c27f6b6fec07e078cd4003aa727 *man/buildPubMedAbst.Rd
d37ecabf97363ac6c99c29f94034165d *man/chrCats.Rd
5a347c4c55a6131f7f793ad3f875be4b *man/chromLocation-class.Rd
2343ecd27f38b6d5c168de555e51bf94 *man/compatibleVersions.Rd
a011dfab7015dd150399f72ccf2bd90a *man/dropECode.Rd
400e337798aef29931c82e09ded1545f *man/entrezGeneByID.Rd
287c45b707b5a8408d5839ae8ffa67e5 *man/entrezGeneQuery.Rd
5435de4abbb1c4e7b0a7682084c3fe11 *man/filterGOByOntology.Rd
85108e224898c59c310598893b0d2487 *man/findNeighbors.Rd
b2c65ec920685d3710e1c5d4f322b7e7 *man/genbank.Rd
bbfd605f8731bd3a78f5f7bf09e968ca *man/getAnnMap.Rd
107b5aa471e469faaa2b3149adffc154 *man/getEvidence.Rd
cb5eced8236a4325feb5de06b27fa5d7 *man/getGOTerm.Rd
6e4ba0dc50511477f7f422004ba00de4 *man/getOntology.Rd
ede283b9d40eb6d9f8d7c1d8267c6dcc *man/getPMInfo.Rd
5a0a74715128f9723734bc797bac1c99 *man/getSYMBOL.Rd
a2988b2db8d9349a84255c262fb258dc *man/getSeq4Acc.Rd
c3b09e4fd54ae2cf7ea48a32ebc5a879 *man/getTDRows.Rd
40c2edeebf7d866211704a0c21e85f01 *man/hasGOannote.Rd
73d2d71c9358ae4110a83023487d14e1 *man/hgByChroms.Rd
e9e80d2e377cf84d691fc9951f25f972 *man/hgCLengths.Rd
c6c9a9505c88dad7208e0690e4a63600 *man/hgu95AProbLocs.Rd
94318686efb7d4fcf7cd56fa232e4541 *man/hgu95Achroloc.Rd
c3137f831c066544239e1cfda7189078 *man/hgu95Achrom.Rd
5d06ddb0b060aa0ae272bdcba3e2577b *man/hgu95All.Rd
9fff1db26298a7890889885a0f5a1221 *man/hgu95Asym.Rd
02055ada20478b06baf9a4088eb8e194 *man/homoData-class.Rd
a27efe02bc0505b908c124f2e195e86a *man/htmlpage.Rd
6941848e5e54f899cde4ce87ffdb8b54 *man/isValidkey.Rd
84a7bc40e97f8327761fac108cba6210 *man/makeAnchor.Rd
541273e84231b0f2395fe766878cb3e0 *man/mapOrgs.Rd
b926ab6b1a8acbbf13e141267ff1953d *man/organism.Rd
43e4475d47889fe90a15381ad5096c9d *man/p2LL.Rd
6b59b034c5b2f56b2b8b1dfb435f7eea *man/pm.abstGrep.Rd
f887b551d45f843f6a922df8539e51d8 *man/pm.getabst.Rd
4833b9bd3f06f15020affffa892bb685 *man/pm.titles.Rd
92c5ead5305f3463bc1d20d6b9836c97 *man/pmAbst2HTML.Rd
a62a7c0219ef4a4f23c563f9d0e709ec *man/pmid2MIAME.Rd
341a8f4bf1839a85a487cfef76b82589 *man/pmidQuery.Rd
d0fec6e0a9ec2ada93f05276e5c9647e *man/pubMedAbst-class.Rd
6dc9aa431288dc47f96ba0fb94a6eb92 *man/pubmed.Rd
0acef2731c172d73593dd0b6aea4a81b *man/readGEOAnn.Rd
55ba27c17602005a2006f38e0052a9ea *man/serializeEnv.Rd
d97cac60cbbedc038c41a81acafe65e9 *man/setRepository.Rd
49717a5ba9ddbfdde080d4ea462cd984 *man/updateSymbolsToValidKeys.Rd
5d7d98f338da1a44d3a2276ce31dc15c *man/usedChromGenes.Rd
f57941cb203fcedded844a3ff1d7073c *tests/annotate_unit_tests.R
e23bc21ebad06c7fbb58be998c895197 *vignettes/DPChart.eps
9c3ec16e9e190869acc6453dfc58967c *vignettes/DPChart.png
db53911202fb912a33eda346576c96c9 *vignettes/GOusage.Rnw
c5252ed77417b2f9bfa4439cc8f611cb *vignettes/HOWTOigenes.ps
e4468fb7f0f649dc1fadbf1002133610 *vignettes/OLDmake
db9cf7f1fe4f4918d529f492ded0f2a3 *vignettes/annotate.Rfc
2db4a7d3fa4b1b1fb4ef3c35cb00f8bd *vignettes/annotate.Rnw
f045fe91d8b121a266b685519d4b87f6 *vignettes/annotate.bib
e35b4b6a5ab993eeacde2254f0fa26ff *vignettes/chromLOC.Rmd
bda28f094557f34d3cf296f57e2acdbd *vignettes/frames.png
456f720eec09c8afb74e18d6b4fda052 *vignettes/noframes.png
e381a16428404ea7a90406018e9da098 *vignettes/prettyOutput.Rnw
afdc3af240364d8c7ef543fd59e04e03 *vignettes/query.Rnw
5e70bf84387d3971082fc7de205af871 *vignettes/useDataPkgs.Rmd
c63fb21baaa4f474835f94ee62e11024 *vignettes/useProbeInfo.Rnw