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.buildAnnotateOpts <- function() {
if (is.null(getOption("BioC"))) {
BioC <- list()
class(BioC) <- "BioCOptions"
options("BioC"=BioC)
}
Annotate <- list()
class(Annotate) <- "BioCPkg"
Annotate$urls <- list( ncbi = "https://www.ncbi.nlm.nih.gov/",
data="http://www.bioconductor.org/datafiles/annotate/")
BioC <- getOption("BioC")
BioC$annotate <- Annotate
options("BioC"=BioC)
}
.onLoad <- function(libname, pkgname) {
.setDefaultRepositories()
.buildAnnotateOpts()
if(.Platform$OS.type == "windows" && interactive()
&& .Platform$GUI == "Rgui"){
Biobase::addVigs2WinMenu("annotate")
}
}
.repositories <- new.env(parent = emptyenv())
.setDefaultRepositories<- function() {
setRepository("ug", getQuery4UG)
setRepository("affy", getQuery4Affy)
setRepository("gb", getQuery4GB)
setRepository("sp", getQuery4SP)
setRepository("omim", getQuery4OMIM)
setRepository("fb", getQuery4FB)
setRepository("en", getQuery4EN)
setRepository("tr", getQuery4TR)
setRepository("go", getQuery4GO)
setRepository("ens", getQuery4ENSEMBL)
}
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