File: aqListGOIDs.Rd

package info (click to toggle)
r-bioc-annotate 1.84.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 3,624 kB
  • sloc: makefile: 2
file content (37 lines) | stat: -rw-r--r-- 855 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
\name{aqListGOIDs}
\alias{aqListGOIDs}

\title{List GO Identifiers by GO Ontology}
\description{
  This function returns a character vector of all GO identifiers in the
  specified ontologies: Biological Process (BP), Cellular Component
  (CC), Molecular Function (MF).
}
\usage{
aqListGOIDs(ont)
}

\arguments{
  \item{ont}{A character vector specifying the two-letter codes of the
    ontologies from which all GO IDs will be retrieved.  Entries must be
  one of \code{"BP"}, \code{"CC"}, or \code{"MF"}.}
}

\value{
  A character vector of GO IDs.  The vector will contain all GO IDs in
  the GO ontologies specified by the \code{ont} argument.
}

\author{Seth Falcon}
\examples{
## all GO IDs in BP
bp_ids = aqListGOIDs("BP")
length(bp_ids)

## all GO IDs in BP or CC
bp_or_cc_ids = aqListGOIDs(c("BP", "CC"))
length(bp_or_cc_ids)
}

\keyword{manip}