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\name{homoData-class}
\docType{class}
\alias{homoData-class}
\alias{homoData}
\alias{homoLL}
\alias{homoOrg}
\alias{homoType}
\alias{homoURL}
\alias{homoACC}
\alias{homoHGID}
%\alias{show}
\alias{homoPS}
\alias{orgNameNCode}
\alias{homoPS,homoData-method}
\alias{homoLL,homoData-method}
\alias{homoOrg,homoData-method}
\alias{homoType,homoData-method}
\alias{homoURL,homoData-method}
\alias{homoACC,homoData-method}
\alias{homoHGID,homoData-method}
\alias{show,homoData-method}
\title{Class "homoData"}
\description{A class to present data for HomologGene data of a matching
sequence}
\section{Objects from the Class}{
Objects can be created by calls of the form \code{new("homoData", ...)}.
}
\section{Slots}{
\describe{
\item{\code{homoOrg}:}{Object of class \code{"character"} the
scientific name of the organism of interest}
\item{\code{homoLL}:}{Object of class \code{"numeric"} the LocusLink
id of the gene of interest}
\item{\code{homoType}:}{Object of class \code{"character"} the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationship}
\item{\code{homoPS}:}{Object of class \code{"numeric"} percent
similarity value}
\item{\code{homoURL}:}{Object of class \code{"character"} the URL for
curated homology relationship}
\item{\code{homoACC}:}{Object of class \code{"character"} the
accession number}
\item{\code{homoHGID}:}{Object of class \code{"numeric"} the
internal HomologGeneID}
}
}
\section{Methods}{
\describe{
\item{homoPS}{\code{signature(object = "homoData")}: the get function for
slot \code{homoPS}}
\item{homoLL}{\code{signature(object = "homoData")}: the get function
for slot \code{homoLL}}
\item{homoOrg}{\code{signature(object = "homoData")}: the get function
for slot \code{homoOrg}}
\item{homoType}{\code{signature(object = "homoData")}: the get function
for slot \code{homoType}}
\item{homoURL}{\code{signature(object = "homoData")}: the get function
for slot \code{homoURL}}
\item{homoACC}{\code{signature(object = "homoData")}: the get function
for slot \code{homoACC}}
\item{homoHGID}{\code{signature(object = "homoHGID")}: the get
function for slot \code{homoHGID}}
}
}
\references{\url{ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README}}
\author{Jianhua Zhang}
\examples{
new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
homoType = "B", homoURL = "", homoHGID = 12345)
}
\keyword{classes}
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