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\name{KEGGFrame}
\docType{class}
% Classes
\alias{KEGGFrame}
\alias{class:KEGGFrame}
\alias{KEGGFrame-class}
% methods
\alias{KEGGFrame}
\alias{KEGGFrame,data.frame,character-method}
\alias{KEGGFrame,data.frame,missing-method}
\alias{getKEGGFrameData}
\alias{getKEGGFrameData,KEGGFrame-method}
\alias{getKEGGFrameData,KEGGAllFrame-method}
\title{KEGGFrame objects}
\description{
These objects each contain a data frame which is required to be
composed of 2 columns. The 1st column are KEGG IDs. The second are
the gene IDs that match to the KEGG IDs. There is also a slot for the
organism that these anotations pertain to. \code{getKEGGFrameData} is
just an accessor method and returns the data.frame contained in the
KEGGFrame object and is mostly used by other code internally.
}
\details{
The purpose of these objects is to create a safe way for annotation
data about KEGG from non-traditional sources to be used for analysis
packages like GSEABase and eventually Category.
}
\examples{
## Make up an example
genes = c(2,9,9,10)
KEGGIds = c("04610","00232","00983","00232")
frameData = data.frame(cbind(KEGGIds,genes))
library(AnnotationDbi)
frame=KEGGFrame(frameData,organism="Homo sapiens")
getKEGGFrameData(frame)
}
\keyword{classes}
\keyword{interface}
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