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#!/bin/bash
## The name of the job, can be anything, simply used when displaying the list of running jobs
#$ -N <%= job.name %>
## Combining output/error messages into one file
#$ -j y
## Giving the name of the output log file
#$ -o <%= log.file %>
## One needs to tell the queue system to use the current directory as the working directory
## Or else the script may fail as it will execute in your top level home directory /home/username
#$ -cwd
## Use environment variables
#$ -V
## Use correct queue
#$ -q all.q
## R settings
module load R/3.4.3
## Export value of DEBUGME environemnt var to worker
export DEBUGME=<%= Sys.getenv("DEBUGME") %>
Rscript -e 'batchtools::doJobCollection("<%= uri %>")'
exit 0
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