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Package: CNEr
Version: 1.26.0
Date: 2019-09-12
Title: CNE Detection and Visualization
Description: Large-scale identification and advanced visualization
of sets of conserved noncoding elements.
Author: Ge Tan <ge_tan@live.com>
Maintainer: Ge Tan <ge_tan@live.com>
Imports: Biostrings (>= 2.33.4), DBI (>= 0.7), RSQLite (>= 0.11.4),
GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.23.16),
rtracklayer (>= 1.25.5), XVector (>= 0.5.4), GenomicAlignments
(>= 1.1.9), methods, S4Vectors (>= 0.13.13), IRanges (>=
2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel,
reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), poweRlaw (>= 0.60.3),
annotate (>= 1.50.0), GO.db (>= 3.3.0), R.utils (>= 2.3.0),
KEGGREST (>= 1.14.0)
Depends: R (>= 3.4)
Suggests: Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat,
BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38,
TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Ggallus.UCSC.galGal3
LinkingTo: S4Vectors, IRanges, XVector
VignetteBuilder: knitr
License: GPL-2 | file LICENSE
License_restricts_use: yes
URL: https://github.com/ge11232002/CNEr
BugReports: https://github.com/ge11232002/CNEr/issues
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: GRangePairs-class.R GRangePairs-methods.R Axt-class.R
CNE-class.R utils.R ceScan.R plot.R makeGeneDbFromUCSC.R
IO-methods.R scoringMatrix.R subAxt-methods.R Axt-methods.R
DB.R AssemblyStats.R GRB.R WholeGenomeAlignment.R Ancora.R
CNE-methods.R GO.R KEGG.R
git_url: https://git.bioconductor.org/packages/CNEr
git_branch: RELEASE_3_12
git_last_commit: e5e582d
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-27 23:19:38 UTC; biocbuild
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