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\name{queryCNEData}
\alias{queryCNEData}
\title{
Query the CNEData package to fetch the CNEs
}
\description{
Query the CNEData package to fetch the CNEs based on target, query species,
winSize and identity.
}
\usage{
queryCNEData(dbName, target, query, winSize, identity,
type=c("target", "all"))
}
\arguments{
\item{dbName}{
The path of SQLite database.
}
\item{target, query}{
The CNEs between target and query species.
}
\item{winSize, identity}{
The thresholds of CNEs to fetch on identity over winSize.
}
\item{type}{
Which set of CNEs are returned. When it is "all",
the CNEs of target always on the left side of returned data.frame.
}
}
\value{
A data.frame of CNEs coordinates in chr, start, end.
}
\author{
Ge Tan
}
|
