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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/taxonomy.R
\name{makeTaxonomyFasta_RDP}
\alias{makeTaxonomyFasta_RDP}
\title{This function creates the dada2 assignTaxonomy training fasta for the RDP trainset .fa file
The RDP trainset data was downloaded from: https://sourceforge.net/projects/rdp-classifier/files/RDP_Classifier_TrainingData/}
\usage{
makeTaxonomyFasta_RDP(fin, fdb, fout, compress = TRUE)
}
\description{
## RDP Trainset 18
path <- "~/Desktop/RDP/RDPClassifier_16S_trainsetNo18_rawtrainingdata"
dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset18_062020.fa"),
file.path(path, "trainset18_db_taxid.txt"),
"~/tax/rdp_train_set_18.fa.gz")
dada2:::tax.check("~/tax/rdp_train_set_18.fa.gz", "~/Desktop/ten_16s.100.fa")
}
\details{
## RDP Trainset 16
path <- "~/Desktop/RDP/RDPClassifier_16S_trainsetNo16_rawtrainingdata"
dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset16_022016.fa"),
file.path(path, "trainset16_db_taxid.txt"),
"~/tax/rdp_train_set_16.fa.gz")
}
\keyword{internal}
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