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<h1>Deprecated functions in package DEGreport</h1>
<div class="hidden name"><code>DEGreport-deprecated.Rd</code></div>
</div>
<div class="ref-description">
<p>These functions are provided for compatibility with older versions
of DEGreport only and will be defunct at the next release.</p>
</div>
<h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
<p>The following functions are deprecated and will be made defunct;
use the replacement indicated below:</p><ul>
<li><p>degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink.
This function was trying to avoid big FoldChange
in variable genes. There are other methods nowadays like lcfShrink function.
DEGreport</p></li>
</ul>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Useful links:</p><ul>
<li><p><a href='http://lpantano.github.io/DEGreport/'>http://lpantano.github.io/DEGreport/</a></p></li>
<li><p>Report bugs at <a href='https://github.com/lpantano/DEGreport/issues'>https://github.com/lpantano/DEGreport/issues</a></p></li>
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<li><a href="#see-also">See also</a></li>
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<p><strong>Maintainer</strong>: Lorena Pantano <a href='mailto:lorena.pantano@gmail.com'>lorena.pantano@gmail.com</a></p>
<p>Other contributors:</p><ul>
<li><p>John Hutchinson <a href='mailto:@jnhutchinson'>@jnhutchinson</a> [contributor]</p></li>
<li><p>Victor Barrera <a href='mailto:@vbarrera'>@vbarrera</a> [contributor]</p></li>
<li><p>Mary Piper <a href='mailto:@marypiper'>@marypiper</a> [contributor]</p></li>
<li><p>Radhika Khetani <a href='mailto:@rkhetani'>@rkhetani</a> [contributor]</p></li>
<li><p>Kenneth Daily [contributor]</p></li>
<li><p>Thanneer Malai Perumal [contributor]</p></li>
<li><p>Rory Kirchner <a href='mailto:@roryk'>@roryk</a> [contributor]</p></li>
<li><p>Michael Steinbaugh <a href='mailto:@mjsteinbaugh'>@mjsteinbaugh</a> [contributor]</p></li>
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