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<title>Create report of RNAseq DEG anlaysis — createReport • DEGreport</title>
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<h1>Create report of RNAseq DEG anlaysis</h1>
<div class="hidden name"><code>createReport.Rd</code></div>
</div>
<div class="ref-description">
<p>This function get the count matrix, pvalues, and FC of a
DEG analysis and create a report to help to detect possible problems
with the data.</p>
</div>
<pre class="usage"><span class='fu'>createReport</span>(<span class='no'>g</span>, <span class='no'>counts</span>, <span class='no'>tags</span>, <span class='no'>pvalues</span>, <span class='no'>path</span>, <span class='kw'>pop</span> <span class='kw'>=</span> <span class='fl'>400</span>,
<span class='kw'>name</span> <span class='kw'>=</span> <span class='st'>"DEGreport"</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>g</th>
<td><p>Character vector with the group the samples belong to.</p></td>
</tr>
<tr>
<th>counts</th>
<td><p>Matrix with counts for each samples and each gene.
Should be same length than pvalues vector.</p></td>
</tr>
<tr>
<th>tags</th>
<td><p>Genes of DEG analysis</p></td>
</tr>
<tr>
<th>pvalues</th>
<td><p>pvalues of DEG analysis</p></td>
</tr>
<tr>
<th>path</th>
<td><p>path to save the figure</p></td>
</tr>
<tr>
<th>pop</th>
<td><p>random genes for background</p></td>
</tr>
<tr>
<th>name</th>
<td><p>name of the html file</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A HTML file with all figures and tables</p>
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<h2>Contents</h2>
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<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
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