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Source: r-bioc-demixt
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-cran-rcpp,
r-bioc-summarizedexperiment,
r-cran-knitr,
r-cran-kernsmooth,
r-cran-matrixcalc,
r-cran-rmarkdown,
r-bioc-dss,
r-cran-dendextend,
r-cran-psych,
r-bioc-sva,
r-cran-matrixstats,
r-cran-truncdist,
r-cran-base64enc,
r-cran-ggplot2,
architecture-is-64-bit
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-demixt
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git
Homepage: https://bioconductor.org/packages/DeMixT/
Rules-Requires-Root: no
Package: r-bioc-demixt
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: Cell type-specific deconvolution of heterogeneous tumor samples
When studying cancer cells from tumors excised from patients, the samples
will be a mixture of tumors and healthy cells, e.g. from invading immune cells.
For comparing samples, the interest may be more on comparing the transcriptome
of the tumors themselves.
.
This package prepares the statistical separation (deconvolution)
of RNAseq or microarray generated expression data for two or three
components.
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