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package * version date source
acepack 1.4.1 2016-10-29 CRAN (R 3.5.0)
annotate 1.57.2 2017-12-27 Bioconductor
AnnotationDbi 1.41.4 2017-12-27 Bioconductor
assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0)
backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
base * 3.5.0 2017-12-27 local
base64enc 0.1-3 2015-07-28 CRAN (R 3.5.0)
bindr 0.1.1 2018-03-13 CRAN (R 3.5.0)
bindrcpp 0.2 2017-06-17 CRAN (R 3.5.0)
Biobase * 2.39.2 2018-02-03 Bioconductor
BiocGenerics * 0.25.3 2018-03-20 Bioconductor
BiocInstaller * 1.29.4 2018-01-28 Bioconductor
BiocParallel * 1.13.1 2018-01-17 Bioconductor
bit 1.1-12 2014-04-09 CRAN (R 3.5.0)
bit64 0.9-7 2017-05-08 CRAN (R 3.5.0)
bitops 1.0-6 2013-08-17 CRAN (R 3.5.0)
blob 1.1.0 2017-06-17 CRAN (R 3.5.0)
blockmodeling * 0.1.9 2017-07-03 CRAN (R 3.5.0)
bsseq * 1.15.1 2018-03-17 Bioconductor
caTools 1.17.1 2014-09-10 CRAN (R 3.5.0)
checkmate 1.8.5 2017-10-24 CRAN (R 3.5.0)
cluster 2.0.6 2017-03-10 CRAN (R 3.5.0)
colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0)
compiler 3.5.0 2017-12-27 local
cowplot * 0.9.2 2017-12-17 CRAN (R 3.5.0)
data.table 1.10.4-3 2017-10-27 CRAN (R 3.5.0)
datasets * 3.5.0 2017-12-27 local
DBI 0.8 2018-03-02 CRAN (R 3.5.0)
DelayedArray * 0.5.22 2018-03-17 Bioconductor
DESeq2 * 1.19.40 2018-03-20 Bioconductor
devtools * 1.13.5 2018-02-18 CRAN (R 3.5.0)
digest 0.6.13 2017-12-14 CRAN (R 3.5.0)
dplyr 0.7.4 2017-09-28 CRAN (R 3.5.0)
DSS * 2.27.0 2018-03-17 Bioconductor
DT 0.4 2018-01-30 CRAN (R 3.5.0)
EBSeq * 1.19.0 2018-03-17 Bioconductor
edgeR * 3.21.9 2018-03-20 Bioconductor
evaluate 0.10.1 2017-06-24 CRAN (R 3.5.0)
foreign 0.8-70 2017-11-28 CRAN (R 3.5.0)
Formula 1.2-2 2017-07-10 CRAN (R 3.5.0)
gdata 2.18.0 2017-06-06 CRAN (R 3.5.0)
genefilter 1.61.1 2018-02-03 Bioconductor
geneplotter 1.57.0 2017-12-27 Bioconductor
GenomeInfoDb * 1.15.5 2018-03-20 Bioconductor
GenomeInfoDbData 1.1.0 2017-12-27 Bioconductor
GenomicRanges * 1.31.22 2018-03-20 Bioconductor
ggplot2 * 2.2.1 2016-12-30 CRAN (R 3.5.0)
glue 1.2.0 2017-10-29 CRAN (R 3.5.0)
gplots * 3.0.1 2016-03-30 CRAN (R 3.5.0)
graphics * 3.5.0 2017-12-27 local
grDevices * 3.5.0 2017-12-27 local
grid 3.5.0 2017-12-27 local
gridExtra 2.3 2017-09-09 CRAN (R 3.5.0)
gtable 0.2.0 2016-02-26 CRAN (R 3.5.0)
gtools 3.5.0 2015-05-29 CRAN (R 3.5.0)
Hmisc 4.1-1 2018-01-03 CRAN (R 3.5.0)
htmlTable 1.11.2 2018-01-20 CRAN (R 3.5.0)
htmltools 0.3.6 2017-04-28 CRAN (R 3.5.0)
htmlwidgets 1.0 2018-01-20 CRAN (R 3.5.0)
httpuv 1.3.6.2 2018-03-02 CRAN (R 3.5.0)
iCOBRA * 1.7.0 2017-12-28 Bioconductor
impute * 1.53.0 2018-03-17 Bioconductor
IRanges * 2.13.28 2018-03-20 Bioconductor
KernSmooth 2.23-15 2015-06-29 CRAN (R 3.5.0)
knitr 1.17 2017-08-10 CRAN (R 3.5.0)
labeling 0.3 2014-08-23 CRAN (R 3.5.0)
lattice 0.20-35 2017-03-25 CRAN (R 3.5.0)
latticeExtra 0.6-28 2016-02-09 CRAN (R 3.5.0)
lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0)
limma * 3.35.13 2018-03-20 Bioconductor
locfit 1.5-9.1 2013-04-20 CRAN (R 3.5.0)
magrittr * 1.5 2014-11-22 CRAN (R 3.5.0)
Matrix 1.2-12 2017-11-20 CRAN (R 3.5.0)
matrixStats * 0.53.1 2018-02-11 CRAN (R 3.5.0)
memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
methods * 3.5.0 2017-12-27 local
mime 0.5 2016-07-07 CRAN (R 3.5.0)
munsell 0.4.3 2016-02-13 CRAN (R 3.5.0)
nnet 7.3-12 2016-02-02 CRAN (R 3.5.0)
parallel * 3.5.0 2017-12-27 local
permute 0.9-4 2016-09-09 CRAN (R 3.5.0)
pillar 1.1.0 2018-01-14 CRAN (R 3.5.0)
pkgconfig 2.0.1 2017-03-21 CRAN (R 3.5.0)
plyr 1.8.4 2016-06-08 CRAN (R 3.5.0)
R.methodsS3 1.7.1 2016-02-16 CRAN (R 3.5.0)
R.oo 1.21.0 2016-11-01 CRAN (R 3.5.0)
R.utils 2.6.0 2017-11-05 CRAN (R 3.5.0)
R6 2.2.2 2017-06-17 CRAN (R 3.5.0)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.5.0)
Rcpp 0.12.14 2017-11-23 CRAN (R 3.5.0)
RCurl 1.95-4.10 2018-01-04 CRAN (R 3.5.0)
reshape2 1.4.3 2017-12-11 CRAN (R 3.5.0)
rlang 0.1.6 2017-12-21 CRAN (R 3.5.0)
rmarkdown * 1.9 2018-03-01 CRAN (R 3.5.0)
ROCR 1.0-7 2015-03-26 CRAN (R 3.5.0)
rpart 4.1-13 2018-02-23 CRAN (R 3.5.0)
rprojroot 1.3-1 2017-12-18 CRAN (R 3.5.0)
RSQLite 2.0 2017-06-19 CRAN (R 3.5.0)
rstudioapi 0.7 2017-09-07 CRAN (R 3.5.0)
S4Vectors * 0.17.37 2018-03-20 Bioconductor
samr * 2.0 2011-06-29 CRAN (R 3.5.0)
scales 0.5.0 2017-08-24 CRAN (R 3.5.0)
shiny 1.0.5 2017-08-23 CRAN (R 3.5.0)
shinyBS 0.61 2015-03-31 CRAN (R 3.5.0)
shinydashboard 0.6.1 2017-06-14 CRAN (R 3.5.0)
splines * 3.5.0 2017-12-27 local
stats * 3.5.0 2017-12-27 local
stats4 * 3.5.0 2017-12-27 local
stringi 1.1.6 2017-11-17 CRAN (R 3.5.0)
stringr 1.2.0 2017-02-18 CRAN (R 3.5.0)
SummarizedExperiment * 1.9.15 2018-03-20 Bioconductor
survival 2.41-3 2017-04-04 CRAN (R 3.5.0)
testthat * 2.0.0 2017-12-13 CRAN (R 3.5.0)
tibble 1.4.2 2018-01-22 CRAN (R 3.5.0)
tools 3.5.0 2017-12-27 local
UpSetR 1.3.3 2017-03-21 CRAN (R 3.5.0)
utils * 3.5.0 2017-12-27 local
withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
XML 3.98-1.10 2018-02-19 CRAN (R 3.5.0)
xtable 1.8-2 2016-02-05 CRAN (R 3.5.0)
XVector 0.19.9 2018-03-20 Bioconductor
zlibbioc 1.25.0 2017-12-27 Bioconductor
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