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Source: r-bioc-dnacopy
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-dnacopy
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-dnacopy.git
Homepage: https://www.bioconductor.org/packages/DNAcopy/
Rules-Requires-Root: no
Package: r-bioc-dnacopy
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: R package: DNA copy number data analysis
Implements the circular binary segmentation (CBS) algorithm to segment DNA
copy number data and identify genomic regions with abnormal copy number.
.
This package is for analyzing array DNA copy number data, which is usually
(but not always) called array Comparative Genomic Hybridization (array CGH)
data It implements a methodology for finding change-points in these data which
are points after which the (log) test over reference ratios have changed
location. This model is that the change-points correspond to positions where
the underlying DNA copy number has changed. Therefore, change-points can be
used to identify regions of gained and lost copy number. Also provided is a
function for making relevant plots of these data.
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