d5781e15ba8222bd0c4a032947bd7d0b *DESCRIPTION
24dd3e2b7d7c7020f1f9e9c9a9a5dd09 *NAMESPACE
ca37b8615e244354479f68e2ee04de1e *NEWS
0d66af77157e095cbf2106508c408dc7 *R/DenNHist.R
493e360e0fa0bebceb765a63005517e5 *R/EBMultiTest.R
07b378d1fcd84946f2243bc9b47000fe *R/EBSeqTest.R
e25c2f19e36d9189e56dd4165d68026c *R/EBTest.R
9f0fc03cafb35d358d106f812f00db70 *R/GetDEResults.R
81576f4ef31b959ab3c19244eb038003 *R/GetMultiFC.R
46ae47677b31eca99883853e1c669f8b *R/GetMultiPP.R
fded8543274bac976f9d85465896568e *R/GetNg.R
0742a2d7c5fd64cfddc157f2693fdc7b *R/GetNormalizedMat.R
f2b3880267cc8c37e2e9ef3eaf6e488b *R/GetPPMat.R
84116a9eb61fa02af9d1a8ff9d46b5a1 *R/GetPatterns.R
c9c7e0caae51145260acc2e6609e8cd2 *R/GetSelectedPatterns.R
eb97c68364f73fc75f808a37ee5fda1f *R/Likefun.R
2d11eba9fe6514994a2e6e70ad58b9ee *R/LikefunMulti.R
7bd12ea932f18df94acb3c5dc2bdb50c *R/LogN.R
40e3032fdcaf554735403797be83819c *R/LogNMulti.R
9554d787e20d9012ebc73913cc3cc294 *R/MedianNorm.R
aea5c998194140adf7c3a4c90ff847be *R/PlotPattern.R
2ed53eeab1553dd9597ca8437d7c7fc9 *R/PlotPostVsRawFC.R
edfd7b4b8f2d96a138ea3ba079ab1c40 *R/PolyFitPlot.R
5cca8a795552d7e7a73e3054cd7997b6 *R/PostFC.R
f3fa535459ea0a1c8f2baabbfa399fce *R/QQP.R
e33af74270e4f2b9b74be9f42856c817 *R/QuantileNorm.R
3264afbc31ed159b296ce9b2723cd28f *R/RankNorm.R
7aa41f5097595077278be0df38cbbeca *R/beta.mom.R
2f69f5e5a3e744be6d113183af3efe6e *R/crit_fun.R
347bac77a7da144bb94c6418cc8fc1ad *R/f0.R
a41cf176760a6ef08cb4e6f0c3192781 *R/f1.R
83e8b8223e5f49db9d761fe6a1120a7d *README.md
118d87d7e4f2de29adaecaeb42cfe893 *data/GeneMat.rda
365aa91e3e707c2269429533c961e305 *data/IsoList.rda
295c5680e5c7d27454c14d0e40203c06 *data/IsoMultiList.rda
0e407e8b64f9316932a95d624fa8144a *data/MultiGeneMat.rda
879dc5efe0db68145534de1ab6aa1d2c *demo/00Index
41c0e8eb970f52477dff38514540034d *demo/EBSeq.R
23cbde174e2b10ac85e09de69e08b1ba *inst/doc/EBSeq_Vignette.R
81643251d624a56fe0c579f145d25848 *inst/doc/EBSeq_Vignette.Rnw
bea204d1f787e92b65b78659512a67d2 *inst/doc/EBSeq_Vignette.pdf
8e5c7072791b01623a04ef0f6f29749e *man/DenNHist.Rd
0966cf41c148899d91a7df1389745771 *man/EBMultiTest.Rd
3bac9df48a9f8da33b4fb363318b9f73 *man/EBSeqTest.Rd
7c93939f46975251b928bc1b0bd61b0d *man/EBSeq_NingLeng-package.Rd
c53a09f3aa13a1fe75ec176ab0091fed *man/EBTest.Rd
f00dd1f35d162c7516f485632c1ae5cf *man/GeneMat.Rd
a5a8a6f1ebc2250e4deb727699d8fe86 *man/GetDEResults.Rd
03f2a6f89d007837fbea898a5c699a36 *man/GetMultiFC.Rd
8415ac3a76ba8c079ff43946d2eace47 *man/GetMultiPP.Rd
fce1498e9af9a46048e9b733fc7674e2 *man/GetNg.Rd
b150bd86daae5e1e9a843cb48f974b4f *man/GetNormalizedMat.Rd
a12b043fe82ef427a1efb6fc6eef1104 *man/GetPPMat.Rd
e6f25d863bea64661af73d974c483f4b *man/GetPatterns.Rd
4b70fb73816be6aad45176f54910b997 *man/GetSelectedPatterns.Rd
21c1361956bdf61e53a26082ee576d82 *man/IsoList.Rd
842eb2e89f8678139de4ee5f8638c39c *man/IsoMultiList.Rd
b86a00d03cf1df79214f1ef316832aa1 *man/Likefun.Rd
1a5ff5087c66612abb8d95e5ec242560 *man/LikefunMulti.Rd
da37d25b805826cebccbf0792b18867d *man/LogN.Rd
7f8d7f22441dea65ac4a15e208bf7d39 *man/LogNMulti.Rd
e353d59317c094a3ac65d53c526224a2 *man/MedianNorm.Rd
32cf1efdfb2eec8b4e99e1710f2fd44d *man/MultiGeneMat.Rd
a71a6d433a5f234e14699d75c817faf1 *man/PlotPattern.Rd
73c8243c511f03a95507a3d9d091037a *man/PlotPostVsRawFC.Rd
90b47d58276924c4a4a5a896580fa867 *man/PolyFitPlot.Rd
b0404334e7c3e02ebca26aa44c144cd6 *man/PostFC.Rd
9b66c23cc5f0ffca3698b6fb92b34170 *man/QQP.Rd
8862b2d94050c15a22814b220de57f66 *man/QuantileNorm.Rd
be78dd72bdcff2806459c1a83d07cd9b *man/RankNorm.Rd
78240d30ba90ca606c6aed74e23e648e *man/beta.mom.Rd
e29b1754ac13993b4d47c42d92015f59 *man/crit_fun.Rd
fc0877f404df6472ea629e0908926333 *man/f0.Rd
abeb27ad88172599723c7be6ae451afe *man/f1.Rd
8e5c7072791b01623a04ef0f6f29749e *man/man/DenNHist.Rd
0966cf41c148899d91a7df1389745771 *man/man/EBMultiTest.Rd
3bac9df48a9f8da33b4fb363318b9f73 *man/man/EBSeqTest.Rd
0b1bc7659fd674fe88fe6bbdcf6f0f54 *man/man/EBSeq_NingLeng-package.Rd
c53a09f3aa13a1fe75ec176ab0091fed *man/man/EBTest.Rd
f00dd1f35d162c7516f485632c1ae5cf *man/man/GeneMat.Rd
a5a8a6f1ebc2250e4deb727699d8fe86 *man/man/GetDEResults.Rd
6c2a291245ecf226b6af4be88af69feb *man/man/GetMultiFC.Rd
204d8047049e5156992194880e347025 *man/man/GetMultiPP.Rd
fce1498e9af9a46048e9b733fc7674e2 *man/man/GetNg.Rd
b150bd86daae5e1e9a843cb48f974b4f *man/man/GetNormalizedMat.Rd
0370d1f68bd41fd334e731422c82bfda *man/man/GetPPMat.Rd
e6f25d863bea64661af73d974c483f4b *man/man/GetPatterns.Rd
4b70fb73816be6aad45176f54910b997 *man/man/GetSelectedPatterns.Rd
21c1361956bdf61e53a26082ee576d82 *man/man/IsoList.Rd
842eb2e89f8678139de4ee5f8638c39c *man/man/IsoMultiList.Rd
b86a00d03cf1df79214f1ef316832aa1 *man/man/Likefun.Rd
1a5ff5087c66612abb8d95e5ec242560 *man/man/LikefunMulti.Rd
da37d25b805826cebccbf0792b18867d *man/man/LogN.Rd
7f8d7f22441dea65ac4a15e208bf7d39 *man/man/LogNMulti.Rd
e353d59317c094a3ac65d53c526224a2 *man/man/MedianNorm.Rd
32cf1efdfb2eec8b4e99e1710f2fd44d *man/man/MultiGeneMat.Rd
a71a6d433a5f234e14699d75c817faf1 *man/man/PlotPattern.Rd
73c8243c511f03a95507a3d9d091037a *man/man/PlotPostVsRawFC.Rd
90b47d58276924c4a4a5a896580fa867 *man/man/PolyFitPlot.Rd
b0404334e7c3e02ebca26aa44c144cd6 *man/man/PostFC.Rd
9b66c23cc5f0ffca3698b6fb92b34170 *man/man/QQP.Rd
8862b2d94050c15a22814b220de57f66 *man/man/QuantileNorm.Rd
be78dd72bdcff2806459c1a83d07cd9b *man/man/RankNorm.Rd
78240d30ba90ca606c6aed74e23e648e *man/man/beta.mom.Rd
e29b1754ac13993b4d47c42d92015f59 *man/man/crit_fun.Rd
fc0877f404df6472ea629e0908926333 *man/man/f0.Rd
abeb27ad88172599723c7be6ae451afe *man/man/f1.Rd
6ce12eff6ed840a2e88dbc5ec28ebeae *src/EBSeq.hpp
31180eb533b8b764a13d9cb0b43c82e8 *src/Makevars
b4f0b014ec53404e843dbc718fabf57e *src/Makevars.win
f8cf12e529f22d1976c03ea60a92adc0 *src/Rexport.cpp
58b4d14d008813b0ad1570d4bfeaead3 *src/agglomerativeClustering.hpp
0afe4269830cc3c3aa84216c70bd7ea5 *src/aggregate.hpp
b5e231d9885976f460e4c649d4faa1e5 *src/counts.hpp
b0ba804ab3ef504618032c36738517f0 *src/float.hpp
7c986479e06b9cc12942092ebf204678 *src/helper.hpp
28f2879023a93af243c1f1b5c9f73454 *src/loadData.hpp
9f92beebe4c117d748efee3739b95d39 *src/negativeBinomial.hpp
25c5d76c874d92374c498e00ae64536a *src/partition.hpp
5b278ea6ef3441d752972b20e24fb9ab *src/wrapper.hpp
5ab5b0636e1129dfa7f4f2c81ea903c5 *vignettes/EBSeq_Vignette.Rnw
f230eb0d9ae09a335d6191b9107b7ee1 *vignettes/PlotExample.png
cfdeb775f1305287e7a94c6aa450fe64 *vignettes/lengetal.bib