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Source: r-bioc-edaseq
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-bioc-biobase,
r-bioc-shortread,
r-bioc-biocgenerics,
r-bioc-iranges,
r-bioc-aroma.light,
r-bioc-rsamtools,
r-bioc-biomart,
r-bioc-biostrings,
r-bioc-annotationdbi,
r-bioc-genomicfeatures,
r-bioc-genomicranges,
r-cran-biocmanager
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-edaseq
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-edaseq.git
Homepage: https://bioconductor.org/packages/EDASeq/
Rules-Requires-Root: no
Package: r-bioc-edaseq
Architecture: all
Depends: ${R:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: GNU R exploratory data analysis and normalization for RNA-Seq
Numerical and graphical summaries of RNA-Seq read data.
Within-lane normalization procedures to adjust for GC-content
effect (or other gene-level effects) on read counts: loess
robust local regression, global-scaling, and full-quantile
normalization (Risso et al., 2011). Between-lane normalization
procedures to adjust for distributional differences between
lanes (e.g., sequencing depth): global-scaling and
full-quantile normalization (Bullard et al., 2010).
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