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\name{featureCounts2DGEList}
\alias{featureCounts2DGEList}
\title{Convert featureCounts object to a DGEList}
\description{
Converts the list output by \code{Rsubread::featureCounts} to a DGEList object.
}
\usage{
featureCounts2DGEList(x)
}
\arguments{
\item{x}{a list produced by \code{Rsubread::featureCounts.}}
}
\details{
Rsubread's \code{featureCounts} function counts reads by features (typically exons or genomic intervals) or meta-features (typically genes).
It may also count reads crossing exon-exon junctions or reads internal to exons.
This function assembles all the read counts output by \code{featureCounts} into an DGEList, ensuring unique row.names where appropriate.
The proportion of reads assigned to features is also stored.
}
\value{A \code{\link[edgeR:DGEList-class]{DGEList}} data object.}
\author{Gordon Smyth.}
\seealso{\code{\link[edgeR:DGEList-class]{DGEList-class}}}
\concept{edgeR classes}
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