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useDynLib(genefilter)
importClassesFrom(Biobase,
ExpressionSet)
importClassesFrom(methods,
ANY,
character,
factor,
matrix,
missing,
numeric,
vector)
importMethodsFrom(AnnotationDbi,
as.list,
colnames,
get,
mget,
ncol,
nrow,
sample)
importMethodsFrom(Biobase,
annotation,
exprs,
featureNames,
pData,
rowQ,
varLabels)
importMethodsFrom(methods,
"body<-",
show)
importFrom(S4Vectors,
rowSums,
colSums,
rowMeans,
colMeans)
importFrom(Biobase,
addVigs2WinMenu,
subListExtract)
importFrom(annotate,
getAnnMap)
importFrom(graphics,
abline,
lines,
par,
plot,
points,
polygon,
rect,
strheight,
strwidth,
text,
legend,
segments)
importFrom(grDevices,
rainbow)
importFrom(methods,
is,
new)
importFrom(stats,
IQR,
anova,
lm,
pchisq,
pf,
pt,
quantile,
sd,
t.test,
na.omit,
p.adjust,
qt,
stepfun)
importFrom(survival,
coxph)
export(Anova,
coxfilter,
cv,
eSetFilter,
varFilter,
featureFilter,
fastT,
ttest,
shorth,
half.range.mode,
rowttests,
colttests,
rowFtests,
colFtests,
rowSds,
rowVars,
dist2,
filterfun,
findLargest,
gapFilter,
genefilter,
genescale,
getFilterNames,
getFuncDesc,
getRdAsText,
isESet,
kOverA,
maxA,
pOverA,
parseArgs,
parseDesc,
setESetArgs,
showESet,
kappa_t, kappa_p,
filtered_p, filtered_R,
rejection_plot,
filter_volcano)
exportClasses(rowROC)
exportMethods(genefinder,
show,
plot,
"[",
sens,
spec,
area,
pAUC,
AUC,
rowpAUCs,
nsFilter)
|
