File: NAMESPACE

package info (click to toggle)
r-bioc-genefilter 1.64.0-1
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 1,996 kB
  • sloc: ansic: 701; xml: 240; cpp: 59; fortran: 47; sh: 16; makefile: 2
file content (138 lines) | stat: -rw-r--r-- 2,538 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
useDynLib(genefilter)

importClassesFrom(Biobase,
                  ExpressionSet)

importClassesFrom(methods,
                  ANY,
                  character,
                  factor,
                  matrix,
                  missing,
                  numeric,
                  vector)

importMethodsFrom(AnnotationDbi,
                  as.list,
                  colnames,
                  get,
                  mget,
                  ncol,
                  nrow,
                  sample)

importMethodsFrom(Biobase,
                  annotation,
                  exprs,
                  featureNames,
                  pData,
                  rowQ,
                  varLabels)

importMethodsFrom(methods,
                  "body<-",
                  show)

importFrom(S4Vectors,
           rowSums,
           colSums,
           rowMeans,
           colMeans)

importFrom(Biobase,
           addVigs2WinMenu,
           subListExtract)

importFrom(annotate,
           getAnnMap)

importFrom(graphics,
           abline,
           lines,
           par,
           plot,
           points,
           polygon,
           rect,
           strheight,
           strwidth,
           text,
           legend,
           segments)

importFrom(grDevices,
           rainbow)

importFrom(methods,
           is,
           new)

importFrom(stats,
           IQR,
           anova,
           lm,
           pchisq,
           pf,
           pt,
           quantile,
           sd,
           t.test,
           na.omit,
           p.adjust,
           qt,
           stepfun)

importFrom(survival,
           coxph)

export(Anova, 
       coxfilter,
       cv, 
       eSetFilter, 
       varFilter, 
       featureFilter,
       fastT, 
       ttest, 
       shorth, 
       half.range.mode,
       rowttests, 
       colttests, 
       rowFtests, 
       colFtests,
       rowSds, 
       rowVars, 
       dist2,
       filterfun, 
       findLargest, 
       gapFilter, 
       genefilter, 
       genescale, 
       getFilterNames,
       getFuncDesc, 
       getRdAsText, 
       isESet, 
       kOverA, 
       maxA, 
       pOverA,
       parseArgs, 
       parseDesc, 
       setESetArgs, 
       showESet,
       kappa_t, kappa_p,
       filtered_p, filtered_R,
       rejection_plot,
       filter_volcano) 

exportClasses(rowROC)

exportMethods(genefinder, 
	      show, 
	      plot, 
	      "[", 
	      sens, 
	      spec,
              area, 
	      pAUC, 
	      AUC, 
	      rowpAUCs, 
	      nsFilter)