1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
Source: r-bioc-genomicalignments
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: gnu-r
Priority: optional
XS-Testsuite: autopkgtest
Build-Depends: debhelper (>= 9),
cdbs,
r-base-dev,
r-bioc-biocgenerics,
r-bioc-iranges,
r-bioc-genomicranges,
r-bioc-biostrings,
r-bioc-rsamtools (>= 1.15.26),
r-bioc-bsgenome (>= 1.31.12),
r-bioc-biocparallel
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
Homepage: http://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html
Package: r-bioc-genomicalignments
Architecture: any
Depends: ${R:Depends},
${misc:Depends},
${shlibs:Depends},
r-bioc-biocgenerics,
r-bioc-iranges,
r-bioc-genomicranges,
r-bioc-biostrings,
r-bioc-rsamtools (>= 1.15.26),
r-bioc-bsgenome (>= 1.31.12),
r-bioc-biocparallel
Recommends: r-bioc-shortread
Description: BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and
manipulating short genomic alignments (typically obtained by aligning
short reads to a reference genome). This includes read counting,
computing the coverage, junction detection, and working with the
nucleotide content of the alignments.
|
