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Source: r-bioc-genomicalignments
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-bioc-biocgenerics (>= 0.37.0),
r-bioc-s4vectors (>= 0.27.12),
r-bioc-iranges (>= 2.23.9),
r-bioc-genomeinfodb,
r-bioc-genomicranges (>= 1.41.5),
r-bioc-summarizedexperiment,
r-bioc-biostrings (>= 2.55.7),
r-bioc-rsamtools,
r-bioc-biocparallel
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Rules-Requires-Root: no
Package: r-bioc-genomicalignments
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and
manipulating short genomic alignments (typically obtained by aligning
short reads to a reference genome). This includes read counting,
computing the coverage, junction detection, and working with the
nucleotide content of the alignments.
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