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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/goseq-data.R
\docType{data}
\name{genes}
\alias{genes}
\title{Androgen stimulation of prostate cancer Cell lines.}
\format{
A named vector of ENSEMBL genes, with 1 representing differential
expression.
}
\source{
Determination of tag density required for digital transcriptome
analysis: application to an androgen-sensitive prostate cancer model, 2008,
Li et. al.
}
\description{
This data set gives the RNA-seq data from an experiment measuring the
effects of androgen stimulation on prostate cancer. Information is given
about all (ENSEMBL) genes for which there was at least one mapping read in
either the treated or untreated RNA-seq experiment. The \code{edgeR}
package was used to determine which genes were differentially expressed.
The details of the analysis can be found in the \code{goseq} vignette.
}
\examples{
data(genes)
head(genes)
}
\references{
Li, H., Lovci, M. T., Kwon, Y. S., Rosenfeld, M. G., Fu, X. D.,
Yeo, G. W. (2008) \emph{Determination of tag density required for digital
transcriptome analysis: application to an androgen-sensitive prostate cancer
model} Proceedings of the National Academy of Sciences of the United States
of America Date: Dec 23 Vol: 105 Issue: 51 Pages: 20179-84
}
\keyword{datasets}
|
