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\name{apoptosisGraph}
\alias{apopGraph}
\alias{apopAttrs}
\alias{apopLocusLink}
\docType{data}
\title{KEGG apoptosis pathway graph}
\description{
A graph representing the apoptosis pathway from
KEGG, as well as a data.frame of attributes for use in plotting the
graph with \code{Rgraphviz} and a list to compare the nodes with their
respective LocusLink IDs.
}
\usage{
data(apopGraph)
}
\details{
The \code{apopGraph} data set contains three objects:
The first is \code{apopGraph}, which is an object of class
\code{graph-NEL} and represents the hsa04210 graph from \code{KEGG}.
The second is \code{apopAttrs}, which is a data.frame with two columns,
and a row for every node in \code{apopGraph}. The first column lists
what color the node is represented with on the \code{KEGG} site. The
second column lists the type of the node - either \code{genesym} or
\code{text}. Most nodes are of type \code{genesym} as they represent
genes, but some of the nodes in the \code{KEGG} graph were not genes
and thus those nodes are of type \code{text}.
The third, \code{apopLocusLink} is a named list where the names
correspond to the node names in \code{apopGraph}. The values of the
list are the LocusLink IDs that correspond to that node in the KEGG graph.
}
\source{
\url{http://www.genome.ad.jp/kegg/pathway/hsa/hsa04210.html}
}
\examples{
data(apopGraph)
if (require("Rgraphviz") & interactive())
plot(apopGraph)
}
\keyword{datasets}
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