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ee10a1b709ca55d858d7ddd982bc332d *DESCRIPTION
eeadfe06023d00463a390602713e2fe0 *NAMESPACE
823bcf7e3315cf0dddd61c835e72306e *R/AllClasses.R
6c7ae8cb6616bc8f5a8a480446e50cec *R/AllGenerics.R
2b5b5f0b8af093c6498d5d141c7331e1 *R/GXLformals.R
b98dcd1878e847714a1ff34097658a04 *R/MultiGraph.R
2e1ada3a5846deb442b7d7020ea11815 *R/NELhandler.R
33a4c5df477155458c25aa5daffde363 *R/TODOT.R
ef94b1f1e50056516a70771b785c77ee *R/attrData.R
abbc39389c906a7843172ff828adfcea *R/bitarray.R
60cbf7d929860ead0ea2be511a09214f *R/buildDepGraph.R
4b3dc99cc53e9838a76b5f435315cae4 *R/clustergraph.R
37af0e9c3066ba1ceeb09755205de04e *R/edgefunctions.R
35686abc1bd7e7d55674fdbbcfbb5f14 *R/graph-constructors.R
0f0781682a70e4d9e1f053724afe8b9a *R/graphNEL.R
0c5ffb2027cb60d7e8ac9dddb90bda08 *R/graphfunctions.R
7d71c012dc3e17b49de0c0c93febb0b0 *R/gxlReader.R
b6eef6bf698d0270529b4cf2169776c8 *R/mat2graph.R
aa6f748c53ef1e94fcdc76cbca903c7f *R/methods-graph.R
6264f5e7806e0c6c66d37f404abf7c68 *R/methods-graphAM.R
be13758807242ee218304d866c360743 *R/methods-graphBAM.R
5ae951813d1d19da4c25855229d83215 *R/methods-multiGraph.R
5d23979fc4adbae311b25a7639763aaf *R/nodes-methods.R
6cd8c5664c6f6adbbdf56923b8177e7c *R/random.R
849be8ef9c12197907214059d586682f *R/reverseEdgeDirections.R
d8de9debde48cf44c26b02f34c6679ca *R/settings.R
a4d21892444147c14a86c3b9fb4ee1a8 *R/standardLabeling.R
58a7d444f6fa2a83bb501ff6997c2602 *R/toDotWithRI.R
636a3936fd1dfb04aacaecdf40037342 *R/write.tlp.R
0a3f027163ee8decc25a04192c3b01ea *R/zzz.R
dba3aac8f0bc273d2ca1d3477270d655 *TODO
eeb06dd4a39ec57ee0ba7419bbd0c2ba *build/vignette.rds
601a185a63bb3d06a5e66bac124932b8 *data/MAPKsig.rda
092c0dd93988ba70a8afc5c2b1c7fbab *data/apopGraph.rda
f7a2248955689d2325f058434b956cf4 *data/biocRepos.rda
8ad37b0360b66493e65cb9a4763fc4fb *data/defunctGraph.rda
1d8f16f2efac1392f804a231abd6bc77 *data/esetsFemale.rda
bc6d60f09dc3987674203ae6ed03147b *data/esetsMale.rda
35e51aae9af59efd50a0405114ef9622 *data/graphExamples.rda
2d2d05460241d2ed2a8d77834cb3446d *data/integrinMediatedCellAdhesion.rda
a4aa6b0e4faf1b41e1eaf9748f3347f5 *data/pancrCaIni.rda
364029a7ce91d12a67966e734471eb6a *inst/GXL/attributesExample.gxl
7fd992b21a514bac15ff49db4c97791a *inst/GXL/c2.gxl
6abf31d5341625201e0805410555e59a *inst/GXL/complexExample.gxl
2f6085a1e265661d55f06cc0776f715c *inst/GXL/createGraphExamples.R
faeba13dcc6bf0c0ab397ea6db241ecc *inst/GXL/graphExample-01.gxl.gz
ae5d1dc0b1b7e0639f78bda39b98ae27 *inst/GXL/graphExample-02.gxl.gz
b01bcf9ac31806da014ef898af1cc041 *inst/GXL/graphExample-03.gxl.gz
4ab455cc32b66832fe2c63a1aab40ce1 *inst/GXL/graphExample-04.gxl.gz
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19ee3a6dfbee7e07fcb9bb67acd61fa5 *inst/GXL/graphExample-06.gxl.gz
1a2a6494c4286c948b7d14182d1b1fbd *inst/GXL/graphExample-07.gxl.gz
39baa52cdab3941c7db5b75840ca849a *inst/GXL/graphExample-08.gxl.gz
61308f9eb28294b2618a9ec46e04be7a *inst/GXL/graphExample-09.gxl.gz
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1294fb70ecc6495f6170692c7c62a381 *inst/GXL/graphExample-13.gxl.gz
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163d5012d0f02e4f839410a4787ff666 *inst/GXL/graphExample-17.gxl.gz
92b42f19590d5f78a3e3b3d0b05f24ef *inst/GXL/graphExample-18.gxl.gz
673a6701113cbfd398e1ea7e0a6d8c5e *inst/GXL/gxl-1.0.1.dtd
ae67fe6a3878ad46b8fb41941ae8daf9 *inst/GXL/kmstEx.gxl
5fd1c7c7e4bfc5b604adacb72ac82f06 *inst/GXL/outOfOrderExample.gxl
4f1afe15ab2ad9e24c533c955837c441 *inst/GXL/simplExample.gxl.www
5d5b973395c003a2a4e3a822228ac3fe *inst/GXL/simpleExample.gxl
55358cb8839a60a272c327ee39fdbeaf *inst/Scripts/Graph.R
a24c3d27ba3e8645eb2e2beb5c35bfaf *inst/Scripts/distGraph.R
bf40d190b42a2bf25bfc1bd196cb8813 *inst/Scripts/multigraph.R
b8c7a7fb18bfc36a4d8ea45d89128d8d *inst/Scripts/pTreetest.R
00e65d98d8249f526c1fbfb69e6ec04b *inst/Scripts/testintersection.R
7dd9dce0515ba5ef7a121526f7bb9bf7 *inst/doc/GraphClass.R
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50313aebb1980725c51d0b14acb9fdca *inst/doc/clusterGraph.R
057db676d251f5ee9f132c9f770d6213 *inst/doc/clusterGraph.Rmd
980210d649a838e8e58e3d3e9767d553 *inst/doc/clusterGraph.html
1198c4cf086a04e8d8616c44d3e29a04 *inst/doc/graph.R
4fbfe78630b1dd2fef40c694609d04f1 *inst/doc/graph.Rmd
dc7bdd70b25c9da51eade40f448bcd7c *inst/doc/graph.html
782a4f6939d809122a1b45c20dc8dcfd *inst/doc/graphAttributes.R
fc11ccadbda181a5cb6073aa7224163c *inst/doc/graphAttributes.Rmd
920f2bd2f8b1885967fd3beb65cce675 *inst/doc/graphAttributes.html
c3ad5529ac47a15798bf1e6319848df3 *inst/perf/Makefile
ee4d516389f9e0b6ee9c15ec6f9cb173 *inst/perf/bgt.R
94d846a43abe9dc4cfd3b401300bf94f *inst/perf/graphperf.Rnw
d5fa0ff7d26ad12aa12261c7d61adfc0 *inst/perf/multigraphs.Rnw
3a38a2a8a75d6cd93eaf0e549cd7d62c *inst/unitTests/MultiGraph_test.R
5e3dc6fb0a8ad693c890d2c302bc3af3 *inst/unitTests/attrData_test.R
13c9349ff41764d3a26d106944d3716c *inst/unitTests/clusterGraph_test.R
0eda8ffb8580fc16615e211504ca3c08 *inst/unitTests/degree_test.R
225d28ef8e214c72cbc036442a7d060d *inst/unitTests/edgeWeights_test.R
36b553ff5782f26fdc7866416df97cb8 *inst/unitTests/graphAM_test.R
01f2c23548dfac88b9e8dac05c1f8709 *inst/unitTests/graphBAM_test.R
de05327522cf9f0086f57912198274ad *inst/unitTests/graphNEL_test.R
b23fa1f036c66cb5a61d8a9201d862bb *inst/unitTests/gxl_test.R
4429198af479c95b4df7fab8e9bb1e90 *inst/unitTests/leaves_test.R
ba4b8270bd63eac842862ad17b2abcd0 *inst/unitTests/nodeAndEdgeData_test.R
21ad40db2ef7ef05ab73553886797500 *inst/unitTests/setbit_test.R
6eae2647cfb2822edffd5fd097244ed9 *inst/unitTests/simple_sparse_test.R
290ace4c358d2514e4f987a769738986 *man/DFS.Rd
ff034a58658f71ab1bc6796a3ce4ba9e *man/IMCA.Rd
f9808e262c90ff417fb974fd51f73221 *man/MAPKsig.Rd
ced258de782126cf57ac616bf3cc78d1 *man/MultiGraph-class.Rd
2e19a6d52323abbdbf3c83b7e5b989c1 *man/acc-methods.Rd
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3640c4fd2b0e480f6a67f1e4fb663617 *man/addNode.Rd
8cfeaf5d1e56a6fba3b83a401652b8fa *man/adj-methods.Rd
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7a9f6ba83bae750358475b24858e6af8 *man/attrData-class.Rd
4f7f8ef29565c373fb20e651bbc0859e *man/attrDataItem-methods.Rd
23059e854e29c409e603d5128ea86b03 *man/attrDefaults-methods.Rd
575ebae2764849ae8558826109dd3d45 *man/aveNumEdges.Rd
8514d6c10c9c01e5f9cd0e1c76e0f3c7 *man/biocRepos.Rd
9cdf73cc5573c444c2f7133f4a6ad201 *man/boundary.Rd
155284d215b29d8d6a4ef4bec45847b2 *man/calcProb.Rd
28a174b889134275a1038f0c62cd695e *man/calcSumProb.Rd
1e276e4849d867a1c97cbc4c85dcfe1a *man/clearNode.Rd
c3c704ccecf74939594c8b423aae61de *man/clusterGraph-class.Rd
10b26a6f15e5e1be09598bd41f67f3b9 *man/clusteringCoefficient-methods.Rd
64a74dabdbcad60f09b711434a2a0e9b *man/combineNodes.Rd
6939220f4d30858f44ee904344112e4d *man/defunct.Rd
cd9ec2ded7628fad8744a73316aaa645 *man/distGraph-class.Rd
7819c1d4457afcde14a5b09f22d20e4b *man/duplicatedEdges.Rd
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a8ce3a8aa534d65975111d3ee4ae0573 *man/edgeMatrix.Rd
25cdbe3879b0293b5b9e38d267805673 *man/edgeSets.Rd
b4aa7049574c89ac04e45f7d58207237 *man/edgeWeights.Rd
cf1de817f0e2cce16aa39c3a51c1148e *man/fromGXL-methods.Rd
b4e6217fcba0fd20c5b076a1d30fc25c *man/graph-class.Rd
b120dce5845f733431910128110dd0c5 *man/graph2SparseM.Rd
9b0367ed95cc4b3e8570397c5cad33f9 *man/graphAM-class.Rd
29449fd6a758725df976daa092ba022d *man/graphBAM-class.Rd
82a8a6c8b4dd70acfbaada2e4cf1f686 *man/graphExamples.Rd
6a936608246643ade12266ff6b347fb7 *man/graphNEL-class.Rd
59a06ef20232ccc5436a680d25103a0d *man/inEdges.Rd
a160334f0bc0b1d0a193a87b20b937e1 *man/internal.Rd
88863366abb9a510629372da9cd4f4f4 *man/isAdjacent-methods.Rd
6c8d0412a70493c6f4951fac9876c7c6 *man/isDirected-methods.Rd
395588862563eb80d66eaf09aed1a828 *man/leaves.Rd
dce2b0940b6d10a084d0ee1ffa01e293 *man/listEdges.Rd
6542c004313efad7d6ce93a0b6dcc20d *man/matrix2Graph.Rd
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9b98d090db461a76ca425de4ceea2d1a *man/multigraph.Rd
0e2781af1407db719de5b77678d25733 *man/nodeData-methods.Rd
1e09dfdb7807918bb50735f654968e16 *man/nodeDataDefaults-methods.Rd
be06827bfab195e78df38038ac672432 *man/numNoEdges.Rd
a0e296efff8d77fe6206fcb7d69ea41d *man/pancrCaIni.Rd
eff3a14bcc30c2270adaf94bf7e4b4c7 *man/randomEGraph.Rd
c97baa8f2ecf0816c3783b502fade314 *man/randomGraph.Rd
9fa23d59825e9abfa305965137e6894a *man/randomNodeGraph.Rd
e271b2d4f47c880831d0b4952141380f *man/removeEdge.Rd
047cddc850c25fd7ff8d5393d3eae2ad *man/removeNode.Rd
15908711c4c530c405740658fce6d000 *man/renderInfo-class.Rd
ee180c27024ded6d467c78490cea607b *man/reverseEdgeDirections.Rd
dc0c811d0e25e50a01b5390895f32de4 *man/settings.Rd
53ce59bbed664234869f671f568e7246 *man/simpleEdge-class.Rd
5d00412279991b0daa75fed65e4acd4c *man/standardLabeling.Rd
8ecd209513066c3169017bb7f68587ee *man/subGraph.Rd
0e72369caa68da2d7423e037d6771b1d *man/toDotR-methods.Rd
23604f58e9c65efd30c54faec7c05c0a *man/toDotWithRI.Rd
e1df6254ee88e7f403f4b41bc276757c *man/ugraph.Rd
7586455fff11be9ea7db0babbb64e753 *man/validGraph.Rd
414e5830a6ecbc7cccd4313643a1d62c *man/write.tlp.Rd
ce6b7edd23813c307e790450e34f8f54 *src/Makevars
81ee3e0bc8c31f992a954533eb4b4826 *src/graph.c
239771178adb21cbffb988f7527b3b9e *tests/graph_unit_tests.R
aecdc3f9ab752c29736df9559efa03c4 *vignettes/GraphClass.Rmd
43e1616cb576290cd5372cc6991fc323 *vignettes/MultiGraphClass.Rmd
057db676d251f5ee9f132c9f770d6213 *vignettes/clusterGraph.Rmd
4fbfe78630b1dd2fef40c694609d04f1 *vignettes/graph.Rmd
fc11ccadbda181a5cb6073aa7224163c *vignettes/graphAttributes.Rmd
1b7a5cfc801ce17c6fa2c55e0d04768f *vignettes/references.bib
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