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Explanation for binary files inside source package according to
http://lists.debian.org/debian-devel/2013/09/msg00332.html
Files: data/biomTrack.rda
The documentation inst/doc/Gviz.Rnw describes this file as a minimalistic
example how to use the BiomartGeneRegionTrack class of Gviz.
Files: data/bmTrack.rda
The documentation man/BiomartGeneRegionTrack-class.Rd uses this
minimalistic example for several demonstration purposes.
Files: data/collapseTrack.rda
The documentation inst/doc/Gviz.Rnw describes this file as a minimalistic
example how to Gviz tries to avoid unreadable plots by collapsing
overlapping ranges
Files: data/cpgIslands.rda
The documentation inst/doc/Gviz.Rnw describes this file as a minimalistic
example containing a run-length encoded vector as sample set of CpG
island coordinates to demonstrate the AnnotationTrack function.
Files: data/cyp2b10.rda
The documentation man/GenomeAxisTrack-class.Rd describes this file as a
minimalistic example to demonstrate the GenomeAxisTrack class and methods.
Files: data/denseAnnTrack.rda
The documentation inst/doc/Gviz.Rnw uses this file as an minimalistic
example to demonstrate an \Rclass{AnnotationTrack} object that represents
a good portion of a real human chromosome.
Files: data/dtHoriz.rda
The documentation inst/doc/Gviz.Rnw uses this file as an minimalistic
example to demonstrate different plotting types demonstrating different
Gviz festures.
Files: data/geneDetails.rda
The documentation inst/doc/Gviz.Rnw uses this example data to demonstrate
details of the DetailsAnnotationTrack} object.
Files: data/geneModels.rda
The documentation inst/doc/Gviz.Rnw uses this file to demonstrate the
track class GeneRegionTrack, which can be created via the constructor
function GeneRegionTrack.
Files: data/idTrack.rda
The documentation man/IdeogramTrack-class.Rd uses this sample data to
demonstrate the IdeogramTrack class and methods.
Files: data/itrack.rda
The documentation inst/doc/Gviz.Rnw uses this as another example data
set to demonstrate GenomeAxisTrack class and methods.
Files: data/twoGroups.rda
The documentation inst/doc/Gviz.Rnw uses this as example data to load
a sample from an GRanges object.
Files: data/ucscItems.rda
The documentation inst/doc/Gviz.Rnw uses this as example data as a
genome axis and an IdeogramTrack of the x chromosome.
Files: Rplots.pdf
This seems to be simply a broken (invalid) pdf file which should be
removed from upstream tarball. I'll inform upstream about this
Files: inst/extdata/test.bedGraph inst/extdata/test.bam inst/extdata/test.bam.bai
These test data are used as examples in the documentation inst/doc/Gviz.Rnw
to demonstrate graphing features.
Files: build/vignette.rds
The documentation inst/doc/Gviz.Rnw is using this simple data file in
demonstrations.
Files: inst/doc/ucsc1.pdf inst/doc/ucsc2.pdf
Screenshots taken by upstream to include into documentation inst/doc/Gviz.Rnw.
-- Andreas Tille <tille@debian.org> Sun, 29 Dec 2013 18:56:22 +0100
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