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<!--
%\VignetteEngine{knitr::knitr}
%\VignetteIndexEntry{Using interactiveDisplayBase for Bioconductor object visualization and modification}
-->
```{r setup, echo=FALSE}
suppressWarnings(suppressPackageStartupMessages(library(knitr)))
options(width=80)
```
```{r wrap-hook, echo=FALSE}
hook_output = knit_hooks$get('output')
knit_hooks$set(output = function(x, options) {
# this hook is used only when the linewidth option is not NULL
if (!is.null(n <- options$linewidth)) {
x = knitr:::split_lines(x)
# any lines wider than n should be wrapped
if (any(nchar(x) > n)) x = strwrap(x, width = n)
x = paste(x, collapse = '\n')
}
hook_output(x, options)
})
```
```{r interactiveDisplayBase-load, echo=FALSE}
suppressWarnings(suppressPackageStartupMessages(library(interactiveDisplayBase)))
```
# interactiveDisplayBase
[interactiveDisplayBase](http://bioconductor.org/packages/2.13/bioc/html/interactiveDisplayBase.html)
`interactiveDisplayBase` uses the function `display()` to host a browser based
application on the fly using the Shiny package. Shiny UI elements are available based on the
object passed to `display()`. These allow the user to modify how the plot is
displayed, and for some objects, modify or subset the data and send it back to
the console.
## Methods
Many of the display method will have a button that allows you return
subset values back to the R session. To use these, couple the intial
call with an assignment operator like this:
```{r dataframe_demo, eval=FALSE}
mtcars2 <- display(mtcars)
```
Once you leave the diplay web gui, the results of the above
interaction will be captured inside of mtcars2.
## Acknowledgments
Shiny <br/>
Joe Cheng and Winston Chang <br/>
http://www.rstudio.com/shiny/ <br/>
Force Layout <br/>
Jeff Allen <br/>
https://github.com/trestletech/shiny-sandbox/tree/master/grn <br/>
gridSVG <br/>
Simon Potter <br/>
http://sjp.co.nz/projects/gridsvg/ <br/>
Zoom/Pan JavaScript libraries <br/>
John Krauss <br/>
https://github.com/talos/jquery-svgpan <br/>
Andrea Leofreddi <br/>
https://code.google.com/p/svgpan/ <br/>
JavaScript Color Chooser <br/>
Jan Odvarko <br/>
http://jscolor.com/ <br/>
Data-Driven Documents <br/>
Michael Bostock <br/>
http://d3js.org/ <br/>
Javascript for returning values from data.frames <br/>
Kirill Savin <br/>
Help with the display method for data.frames <br/>
Dan Tenenbaum <br/>
|
