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Source: r-bioc-isoformswitchanalyzer
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-bioc-limma,
r-bioc-dexseq,
r-bioc-saturn,
r-bioc-sva,
r-cran-ggplot2 (>= 3.3.5),
r-bioc-pfamanalyzer,
r-bioc-bsgenome,
r-cran-plyr,
r-cran-reshape2,
r-cran-gridextra,
r-bioc-biostrings,
r-bioc-iranges,
r-bioc-genomicranges,
r-cran-rcolorbrewer,
r-bioc-rtracklayer,
r-cran-venndiagram,
r-cran-dbi,
r-bioc-genomeinfodb,
r-bioc-tximport,
r-bioc-tximeta,
r-bioc-edger,
r-cran-futile.logger,
r-cran-stringr,
r-cran-dplyr,
r-cran-magrittr,
r-cran-readr,
r-cran-tibble,
r-bioc-xvector,
r-bioc-biocgenerics,
r-cran-rcurl,
r-bioc-biobase,
r-bioc-summarizedexperiment,
r-cran-tidyr,
r-bioc-s4vectors,
r-bioc-biocparallel,
r-bioc-pwalign,
architecture-is-64-bit
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer.git
Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Rules-Requires-Root: no
Package: r-bioc-isoformswitchanalyzer
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: Identify, Annotate and Visualize Alternative Splicing and
Isoform Switches with Functional Consequences from both short- and
long-read RNA-seq data. Analysis of alternative splicing and
isoform switches with predicted functional consequences (e.g.
gain/loss of protein domains etc.) from quantification of all
types of RNASeq by tools such as Kallisto, Salmon, StringTie,
Cufflinks/Cuffdiff etc.
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