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Source: r-bioc-megadepth
Section: gnu-r
Priority: optional
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-megadepth
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-megadepth.git
Homepage: https://bioconductor.org/packages/megadepth/
Standards-Version: 4.7.0
Rules-Requires-Root: no
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-cran-xfun,
r-cran-fs,
r-bioc-genomicranges,
r-cran-readr,
r-cran-cmdfun,
r-cran-dplyr,
r-cran-magrittr
Testsuite: autopkgtest-pkg-r
Package: r-bioc-megadepth
Architecture: all
Depends: ${R:Depends},
${misc:Depends},
megadepth
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: BioCOnductor BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher
Wilks available at https://github.com/ChristopherWilks/megadepth. It is
particularly useful for computing the coverage of a set of genomic regions
across bigWig or BAM files. With this package, you can build base-pair
coverage matrices for regions or annotations of your choice from BigWig
files. Megadepth was used to create the raw files provided by
https://bioconductor.org/packages/recount3.
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