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\name{kda.start.identify}
\alias{kda.start.identify}
\title{
Convert identities to indices for wKDA
}
\description{
\code{\link{kda.start.identify}} searches the members of \code{dat} among
the members of \code{labels} with respect to the \code{varname} attribute,
returns the matching rows of the \code{dat}.
}
\usage{
kda.start.identify(dat, varname, labels)
}
\arguments{
\item{dat}{
data list of the identities that will be searched
}
\item{varname}{
search will be performed with respect to which attribute (MODULE or NODE)
}
\item{labels}{
the place, where data list (i.e. \code{dat}) will be searched
}
}
\value{
\item{res}{matched rows of \code{dat} among the members of \code{labels}
list according to the \code{varname} attribute}
}
\examples{
## Converts identities (either module names or gene names) to the indices
aa<- data.frame(MODULE=c("Mod1", "Mod1", "Mod2", "Mod2", "Mod3"),
NODE=c("GeneA", "GeneC", "GeneB", "GeneC", "GeneA"))
aa
bb <- kda.start.identify(aa, "MODULE", c("Mod1"))
bb
cc <- kda.start.identify(aa, "MODULE", c("Mod1", "Mod3"))
cc
dd <- kda.start.identify(aa, "NODE", c("GeneA"))
dd
}
\references{
Shu L, Zhao Y, Kurt Z, Byars SG, Tukiainen T, Kettunen J, Orozco LD,
Pellegrini M, Lusis AJ, Ripatti S, Zhang B, Inouye M, Makinen V-P, Yang X.
Mergeomics: multidimensional data integration to identify pathogenic
perturbations to biological systems. BMC genomics. 2016;17(1):874.
}
\author{
Ville-Petteri Makinen
}
\seealso{
\code{\link{kda.analyze}}, \code{\link{kda.finish}},
\code{\link{kda.prepare}}, \code{\link{kda.start}}
}
|
