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Source: r-bioc-monocle
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-cran-matrix (>= 1.2-6),
r-bioc-biobase,
r-cran-ggplot2,
r-cran-vgam (>= 1.0-6),
r-cran-ddrtree,
r-cran-igraph,
r-bioc-biocgenerics,
r-bioc-hsmmsinglecell,
r-cran-plyr,
r-cran-cluster,
r-cran-combinat,
r-cran-fastica,
r-cran-irlba,
r-cran-matrixstats,
r-cran-densityclust,
r-cran-rtsne,
r-cran-mass,
r-cran-reshape2,
r-bioc-limma,
r-cran-tibble,
r-cran-dplyr,
r-cran-qlcmatrix,
r-cran-pheatmap,
r-cran-stringr,
r-cran-proxy,
r-cran-slam,
r-cran-viridis,
r-bioc-biocviews,
r-cran-rann,
r-cran-rcpp (>= 0.12.0)
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-monocle
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
Homepage: https://bioconductor.org/packages/monocle/
Rules-Requires-Root: no
Package: r-bioc-monocle
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.
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