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##fileformat=VCFv4.1
##SnpEffCmd="SnpEff GRCh37.74 AC_vcf.filtered_variants.vcf -hgvs -lof -no-downstream -no-upstream -no-intergenic "
##SnpEffVersion="4.1h (build 2015-08-03), by Pablo Cingolani"
##SnpSiftCmd="SnpSift annotate -tabix -name GoNLv5_ -info AF,AN,AC /hpc/cog_bioinf/common_dbs/GoNL/gonl_release5/site_freqs/gonl.snps_indels.r5.sorted.vcf.gz AC_snpEff_snpSift_Cosmicv76.vcf.filtered_variants.vcf"
##SnpSiftVersion="SnpSift 4.1h (build 2015-08-03), by Pablo Cingolani"
##fileDate=20200528
##reference=file:///hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta
##source=SelectVariants
##FILTER=All filters passed
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=1,length=249250621,assembly="hg19">
##contig=<ID=2,length=243199373,assembly="hg19">
##contig=<ID=3,length=198022430,assembly="hg19">
##contig=<ID=4,length=191154276,assembly="hg19">
##contig=<ID=5,length=180915260,assembly="hg19">
##contig=<ID=6,length=171115067,assembly="hg19">
##contig=<ID=7,length=159138663,assembly="hg19">
##contig=<ID=8,length=146364022,assembly="hg19">
##contig=<ID=9,length=141213431,assembly="hg19">
##contig=<ID=10,length=135534747,assembly="hg19">
##contig=<ID=11,length=135006516,assembly="hg19">
##contig=<ID=12,length=133851895,assembly="hg19">
##contig=<ID=13,length=115169878,assembly="hg19">
##contig=<ID=14,length=107349540,assembly="hg19">
##contig=<ID=15,length=102531392,assembly="hg19">
##contig=<ID=16,length=90354753,assembly="hg19">
##contig=<ID=17,length=81195210,assembly="hg19">
##contig=<ID=18,length=78077248,assembly="hg19">
##contig=<ID=19,length=59128983,assembly="hg19">
##contig=<ID=20,length=63025520,assembly="hg19">
##contig=<ID=21,length=48129895,assembly="hg19">
##contig=<ID=22,length=51304566,assembly="hg19">
##contig=<ID=X,length=155270560,assembly="hg19">
##contig=<ID=Y,length=59373566,assembly="hg19">
##contig=<ID=MT,length=16569,assembly="hg19">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ACGRABULK
1 105605108 1:105605108_T/A T A 429.75 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:75:0,75,818
1 105605108 1:105605108_T/A T A 429.75 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:75:0,75,818
|
