1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
|
##fileformat=VCFv4.1
##fileDate=20210324
##reference=file:///hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta
##source=SelectVariants
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=1,length=249250621,assembly="hg19">
##contig=<ID=2,length=243199373,assembly="hg19">
##contig=<ID=3,length=198022430,assembly="hg19">
##contig=<ID=4,length=191154276,assembly="hg19">
##contig=<ID=5,length=180915260,assembly="hg19">
##contig=<ID=6,length=171115067,assembly="hg19">
##contig=<ID=7,length=159138663,assembly="hg19">
##contig=<ID=8,length=146364022,assembly="hg19">
##contig=<ID=9,length=141213431,assembly="hg19">
##contig=<ID=10,length=135534747,assembly="hg19">
##contig=<ID=11,length=135006516,assembly="hg19">
##contig=<ID=12,length=133851895,assembly="hg19">
##contig=<ID=13,length=115169878,assembly="hg19">
##contig=<ID=14,length=107349540,assembly="hg19">
##contig=<ID=15,length=102531392,assembly="hg19">
##contig=<ID=16,length=90354753,assembly="hg19">
##contig=<ID=17,length=81195210,assembly="hg19">
##contig=<ID=18,length=78077248,assembly="hg19">
##contig=<ID=19,length=59128983,assembly="hg19">
##contig=<ID=20,length=63025520,assembly="hg19">
##contig=<ID=21,length=48129895,assembly="hg19">
##contig=<ID=22,length=51304566,assembly="hg19">
##contig=<ID=X,length=155270560,assembly="hg19">
##contig=<ID=Y,length=59373566,assembly="hg19">
##contig=<ID=MT,length=16569,assembly="hg19">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PD21928b
1 105605108 1:105605108_T/A T A 429.75 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:75:0,75,818
1 120042428 1:120042428_T/C T C 440.79 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,862
1 153419426 1:153419426_G/A G A 358.57 PASS . GT:AD:DP:GQ:PL 0/0:28,0:29:63:0,63,589
1 18519055 1:18519055_A/C A C 630.69 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1173
1 236439459 1:236439459_G/A G A 131.89 PASS . GT:AD:DP:GQ:PL 0/0:45,0:46:99:0,132,1473
1 30866482 1:30866482_A/G A G 469.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,980
1 49788779 1:49788779_C/T C T 418.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,840
1 87926521 1:87926521_A/G A G 214.71 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:60:0,60,672
1 98513238 1:98513238_G/T G T 203.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:69:0,69,772
2 127851747 2:127851747_A/G A G 561.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:93:0,93,1029
2 13202793 2:13202793_G/A G A 277.68 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:63:0,63,663
2 154703001 2:154703001_G/A G A 272.75 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,929
2 190780628 2:190780628_A/T A T 267.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:75:0,75,845
2 195663137 2:195663137_T/C T C 434.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,918
2 211734095 2:211734095_G/A G A 372.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,928
2 21323050 2:21323050_G/T G T 504.57 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1213
2 232778335 2:232778335_C/T C T 464.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:75:0,75,749
2 233458839 2:233458839_G/A G A 306.68 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1125
2 32147481 2:32147481_C/A C A 191.69 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,874
2 7856000 2:7856000_C/A C A 393.68 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:51:0,51,567
3 110566829 3:110566829_G/C G C 167.63 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,921
3 124280467 3:124280467_G/A G A 256.91 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,854
3 126223594 3:126223594_A/G A G 359.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,873
3 129263752 3:129263752_C/T C T 172.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,585
3 145472311 3:145472311_T/G T G 440.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1073
3 146767279 3:146767279_A/T A T 287.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,611
3 172965711 3:172965711_C/A C A 246.78 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:54:0,54,602
3 2754434 3:2754434_T/G T G 274.01 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,804
3 46189491 3:46189491_T/C T C 421.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,820
3 7853492 3:7853492_C/T C T 494.69 PASS . GT:AD:DP:GQ:PL 0/0:22,0:23:60:0,60,590
3 80571297 3:80571297_T/C T C 303.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,816
3 84357201 3:84357201_A/T A T 353.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1246
3 95175022 3:95175022_G/T G T 478.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1292
3 95514508 3:95514508_C/A C A 573.63 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:96:0,96,1058
3 95801492 3:95801492_G/A G A 142.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:28:63:0,63,657
4 107686353 4:107686353_G/C G C 306.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,852
4 121401841 4:121401841_G/A G A 352.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:63:0,63,689
4 134395225 4:134395225_T/C T C 432.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,589
4 169725732 4:169725732_C/T C T 512.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:90:0,90,923
4 175905884 4:175905884_C/T C T 376.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:30:84:0,84,928
4 180791738 4:180791738_T/C T C 354.74 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,873
4 30226901 4:30226901_A/T A T 263.68 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:93:0,93,1023
4 34038767 4:34038767_C/T C T 453.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:29:72:0,72,812
4 43220076 4:43220076_G/T G T 581.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1147
4 45188677 4:45188677_G/A G A 240.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:26:48:0,48,506
4 45829512 4:45829512_A/G A G 355.68 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1104
4 45847748 4:45847748_C/A C A 616.57 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:75:0,75,837
4 59457595 4:59457595_C/A C A 193.62 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,835
4 61163218 4:61163218_C/T C T 498.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,846
4 71234912 4:71234912_G/A G A 390.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,818
4 76260245 4:76260245_A/C A C 152.59 PASS . GT:AD:DP:GQ:PL 0/0:32,0:33:90:0,90,1003
5 12627900 5:12627900_G/A G A 432.69 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1351
5 127014033 5:127014033_G/T G T 423.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1230
5 12844046 5:12844046_G/A G A 282.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:90:0,90,934
5 12955982 5:12955982_C/T C T 328.7 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:60:0,60,605
5 13192749 5:13192749_A/G A G 299.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1080
5 136328468 5:136328468_G/T G T 495.69 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1053
5 144977028 5:144977028_G/A G A 351.75 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,799
5 146303174 5:146303174_G/A G A 303.68 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,1182
5 152456304 5:152456304_C/T C T 671.57 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:84:0,84,863
5 171989608 5:171989608_G/A G A 360.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,946
5 177660598 5:177660598_C/A C A 418.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,899
5 19618180 5:19618180_C/T C T 289.68 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,665
5 22074693 5:22074693_C/T C T 490.99 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:60:0,60,663
5 45797635 5:45797635_G/T G T 372.79 PASS . GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1491
5 54380761 5:54380761_G/A G A 216.09 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,848
5 62522708 5:62522708_G/A G A 426.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:25:69:0,69,751
5 62694879 5:62694879_T/C T C 228.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,898
5 83220715 5:83220715_T/C T C 526.69 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,111,1232
5 99274540 5:99274540_C/T C T 439.05 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,722
6 110307203 6:110307203_A/G A G 260.68 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:75:0,75,825
6 11162361 6:11162361_G/A G A 350.68 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1146
6 122569455 6:122569455_G/A G A 427.61 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,801
6 13918723 6:13918723_C/T C T 483.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1075
6 14428201 6:14428201_G/A G A 343.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:87:0,87,839
6 152699746 6:152699746_G/C G C 356.68 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1130
6 157625795 6:157625795_A/C A C 360.7 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:57:0,57,640
6 164619669 6:164619669_T/A T A 689.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,784
6 170755652 6:170755652_G/A G A 341.68 PASS . GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,111,1158
6 87340826 6:87340826_T/C T C 248.68 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:87:0,87,960
6 93855818 6:93855818_T/C T C 356.69 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,873
6 96494404 6:96494404_T/C T C 391.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,857
7 101877792 7:101877792_C/T C T 453.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:87:0,87,867
7 128892037 7:128892037_A/G A G 347.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:87:0,87,938
7 146090966 7:146090966_C/A C A 246.05 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:60:0,60,657
7 19236833 7:19236833_A/T A T 319.69 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,866
7 4162947 7:4162947_G/A G A 227.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,688
7 54946897 7:54946897_G/A G A 157.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:66:0,66,746
7 57816789 7:57816789_G/T G T 660.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:87:0,87,965
7 70824873 7:70824873_C/T C T 459.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,858
7 88125817 7:88125817_T/G T G 724.69 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:75:0,75,810
7 89165896 7:89165896_G/A G A 557.69 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1409
8 111981491 8:111981491_G/A G A 270.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:27:72:0,72,716
8 113735312 8:113735312_G/A G A 317.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:57:0,57,572
8 126337594 8:126337594_G/A G A 258.68 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,733
8 131520106 8:131520106_G/A G A 439.69 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:66:0,66,694
8 132250140 8:132250140_G/A G A 482.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,800
8 25817812 8:25817812_G/A G A 489.68 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1104
8 32701635 8:32701635_C/T C T 624.68 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1120
8 34120609 8:34120609_A/G A G 349.68 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1170
8 50769374 8:50769374_G/T G T 388.69 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1096
8 55655886 8:55655886_G/A G A 233.69 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1020
8 57342312 8:57342312_C/A C A 315.56 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,901
8 63710809 8:63710809_C/T C T 516.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,797
8 73338999 8:73338999_C/T C T 253.68 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1204
8 80056842 8:80056842_C/T C T 553.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,781
8 95036654 8:95036654_G/A G A 517.57 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1049
9 100713628 9:100713628_G/A G A 595.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:72:0,72,718
9 105689129 9:105689129_G/T G T 354.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,557
9 106303450 9:106303450_C/T C T 503.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:69:0,69,692
9 113740720 9:113740720_C/T C T 509.69 PASS . GT:AD:DP:GQ:PL 0/0:41,0:42:99:0,120,1317
9 126817066 9:126817066_C/T C T 572.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,767
9 135372824 9:135372824_G/A G A 320.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:69:0,69,705
9 24021686 9:24021686_A/C A C 318.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,929
9 36586288 9:36586288_G/A G A 346.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:57:0,57,558
10 102237105 10:102237105_T/C T C 361.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:69:0,69,780
10 134826174 10:134826174_G/A G A 379.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,792
10 2166548 10:2166548_C/T C T 437.91 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:96:0,96,978
10 59330376 10:59330376_G/A G A 412.68 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,671
10 6593750 10:6593750_C/T C T 196.77 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:72:0,72,720
10 69879695 10:69879695_C/A C A 352.77 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,135,1462
10 70260452 10:70260452_C/T C T 458.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:69:0,69,736
10 90547425 10:90547425_C/T C T 495.57 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,849
10 90966915 10:90966915_G/A G A 395.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:28:72:0,72,822
10 99106096 10:99106096_T/G T G 276.68 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1105
11 101622996 11:101622996_C/T C T 309.68 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1129
11 109372668 11:109372668_A/T A T 676.37 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,838
11 30291500 11:30291500_T/A T A 325.91 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1085
11 39259033 11:39259033_G/A G A 388.68 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1287
11 48317798 11:48317798_G/T G T 127.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,735
11 55400310 11:55400310_C/A C A 408.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:69:0,69,758
11 82442611 11:82442611_G/A G A 758.7 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,893
12 103005878 12:103005878_G/T G T 249.79 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,844
12 11196780 12:11196780_G/A G A 275.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:27:78:0,78,795
12 13210004 12:13210004_C/T C T 382.75 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:66:0,66,647
12 132309504 12:132309504_G/A G A 368.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:78:0,78,774
12 59727415 12:59727415_G/A G A 510.68 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:90:0,90,928
12 82832859 12:82832859_C/A C A 466.74 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,783
12 92032890 12:92032890_C/T C T 548.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:26:72:0,72,805
13 106190214 13:106190214_G/A G A 227.69 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:84:0,84,841
13 108422427 13:108422427_A/C A C 537.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,807
13 37259144 13:37259144_C/T C T 549.45 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1111
13 41252435 13:41252435_T/A T A 214.56 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:57:0,57,631
13 51643480 13:51643480_C/A C A 369.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,920
13 54168787 13:54168787_C/T C T 566.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:87:0,87,871
13 70005869 13:70005869_G/T G T 213.79 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:72:0,72,805
13 77281199 13:77281199_G/A G A 615.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,893
13 84879441 13:84879441_A/G A G 299.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,928
13 97361667 13:97361667_G/A G A 526.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,730
13 97469536 13:97469536_T/C T C 226.64 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1138
14 100714701 14:100714701_C/A C A 317.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,540
14 104854480 14:104854480_G/A G A 475.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,729
14 26332037 14:26332037_C/T C T 279.68 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1164
14 28332528 14:28332528_G/A G A 425.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,751
14 40815398 14:40815398_C/T C T 317.7 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:84:0,84,853
14 57529223 14:57529223_G/A G A 281.68 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1073
14 59080421 14:59080421_A/G A G 529.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1073
14 70723791 14:70723791_G/A G A 330.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,872
14 94987488 14:94987488_G/A G A 208.69 PASS . GT:AD:DP:GQ:PL 0/0:27,0:28:72:0,72,750
14 97624348 14:97624348_G/A G A 282.68 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:63:0,63,635
15 25962672 15:25962672_C/T C T 276.68 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1062
15 48494511 15:48494511_C/T C T 580.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1092
15 53112092 15:53112092_G/A G A 203.68 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:75:0,75,768
15 89228527 15:89228527_G/A G A 363.75 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1013
16 10898285 16:10898285_T/C T C 357.68 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1017
16 26859858 16:26859858_C/T C T 480.68 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:60:0,60,639
16 49027236 16:49027236_C/T C T 363.68 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:63:0,63,659
16 62873674 16:62873674_C/T C T 325.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,849
16 71169238 16:71169238_C/T C T 483.68 PASS . GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,217,2405
16 73490124 16:73490124_G/A G A 211.68 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1309
17 19775041 17:19775041_G/T G T 314.77 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,842
17 21863464 17:21863464_C/G C G 257.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:84:0,84,924
17 31531530 17:31531530_T/C T C 313.05 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:93:0,93,1025
17 44898342 17:44898342_A/G A G 316.01 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:87:0,87,981
17 53774516 17:53774516_A/C A C 259.68 PASS . GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,856
17 66606603 17:66606603_A/G A G 318.68 PASS . GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1507
18 14317682 18:14317682_G/A G A 431.68 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,791
18 35262385 18:35262385_C/T C T 432.68 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,662
18 51962419 18:51962419_A/G A G 312.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:93:0,93,1049
18 55223310 18:55223310_G/A G A 449.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:96:0,96,1008
18 75231956 18:75231956_A/G A G 477.68 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,123,1352
18 76212798 18:76212798_C/T C T 804.57 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:84:0,84,848
18 7759078 18:7759078_G/C G C 496.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1178
19 32964414 19:32964414_G/A G A 1142.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:78:0,78,793
19 45247350 19:45247350_G/A G A 399.68 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:60:0,60,608
20 137078 20:137078_T/A T A 331.58 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:60:0,60,669
20 31907921 20:31907921_C/T C T 350.68 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,108,1067
20 39975014 20:39975014_A/C A C 326.68 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,907
20 58464439 20:58464439_A/C A C 233.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,853
20 5923948 20:5923948_C/T C T 278.68 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1057
20 62032404 20:62032404_G/A G A 406.68 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:75:0,75,717
20 7666514 20:7666514_T/A T A 447.7 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1183
21 46424092 21:46424092_C/T C T 449.68 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:93:0,93,930
21 47019908 21:47019908_C/T C T 238.68 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,751
22 48192011 22:48192011_C/T C T 323.68 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1236
22 49585896 22:49585896_C/T C T 455.74 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,771
|
