File: intestine1-sample.vcf

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r-bioc-mutationalpatterns 3.8.1%2Bdfsg-1
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##fileformat=VCFv4.1
##fileDate=20210324
##reference=file:///data_fedor8/common_data/GATK_b37_bundle/human_g1k_v37.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=1,length=249250621,assembly="hg19">
##contig=<ID=2,length=243199373,assembly="hg19">
##contig=<ID=3,length=198022430,assembly="hg19">
##contig=<ID=4,length=191154276,assembly="hg19">
##contig=<ID=5,length=180915260,assembly="hg19">
##contig=<ID=6,length=171115067,assembly="hg19">
##contig=<ID=7,length=159138663,assembly="hg19">
##contig=<ID=8,length=146364022,assembly="hg19">
##contig=<ID=9,length=141213431,assembly="hg19">
##contig=<ID=10,length=135534747,assembly="hg19">
##contig=<ID=11,length=135006516,assembly="hg19">
##contig=<ID=12,length=133851895,assembly="hg19">
##contig=<ID=13,length=115169878,assembly="hg19">
##contig=<ID=14,length=107349540,assembly="hg19">
##contig=<ID=15,length=102531392,assembly="hg19">
##contig=<ID=16,length=90354753,assembly="hg19">
##contig=<ID=17,length=81195210,assembly="hg19">
##contig=<ID=18,length=78077248,assembly="hg19">
##contig=<ID=19,length=59128983,assembly="hg19">
##contig=<ID=20,length=63025520,assembly="hg19">
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##contig=<ID=22,length=51304566,assembly="hg19">
##contig=<ID=X,length=155270560,assembly="hg19">
##contig=<ID=Y,length=59373566,assembly="hg19">
##contig=<ID=MT,length=16569,assembly="hg19">
##contig=<ID=GL000207.1,length=4262,assembly="hg19">
##contig=<ID=GL000226.1,length=15008,assembly="hg19">
##contig=<ID=GL000229.1,length=19913,assembly="hg19">
##contig=<ID=GL000231.1,length=27386,assembly="hg19">
##contig=<ID=GL000210.1,length=27682,assembly="hg19">
##contig=<ID=GL000239.1,length=33824,assembly="hg19">
##contig=<ID=GL000235.1,length=34474,assembly="hg19">
##contig=<ID=GL000201.1,length=36148,assembly="hg19">
##contig=<ID=GL000247.1,length=36422,assembly="hg19">
##contig=<ID=GL000245.1,length=36651,assembly="hg19">
##contig=<ID=GL000197.1,length=37175,assembly="hg19">
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##contig=<ID=GL000198.1,length=90085,assembly="hg19">
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##contig=<ID=GL000191.1,length=106433,assembly="hg19">
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##contig=<ID=GL000211.1,length=166566,assembly="hg19">
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##contig=<ID=GL000216.1,length=172294,assembly="hg19">
##contig=<ID=GL000215.1,length=172545,assembly="hg19">
##contig=<ID=GL000205.1,length=174588,assembly="hg19">
##contig=<ID=GL000219.1,length=179198,assembly="hg19">
##contig=<ID=GL000224.1,length=179693,assembly="hg19">
##contig=<ID=GL000223.1,length=180455,assembly="hg19">
##contig=<ID=GL000195.1,length=182896,assembly="hg19">
##contig=<ID=GL000212.1,length=186858,assembly="hg19">
##contig=<ID=GL000222.1,length=186861,assembly="hg19">
##contig=<ID=GL000200.1,length=187035,assembly="hg19">
##contig=<ID=GL000193.1,length=189789,assembly="hg19">
##contig=<ID=GL000194.1,length=191469,assembly="hg19">
##contig=<ID=GL000225.1,length=211173,assembly="hg19">
##contig=<ID=GL000192.1,length=547496,assembly="hg19">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	STE99BLOOD
1	170266857	1:170266857_G/A	G	A	238.19	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,694
1	188715025	1:188715025_G/A	G	A	882.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1307
1	195451186	1:195451186_C/G	C	G	390.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,975
1	202952355	1:202952355_G/T	G	T	375.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1135
1	21515077	1:21515077_A/T	A	T	446.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,996
1	220394829	1:220394829_C/A	C	A	381.19	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1377
1	243122353	1:243122353_T/A	T	A	697.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1139
1	39748886	1:39748886_G/A	G	A	332.19	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1239
1	72203758	1:72203758_C/T	C	T	707.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1188
1	86460322	1:86460322_A/G	A	G	913.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1200
2	103049721	2:103049721_C/T	C	T	480.19	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1229
2	140906996	2:140906996_A/T	A	T	215.19	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1772
2	159560822	2:159560822_G/A	G	A	337.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1180
2	174670866	2:174670866_C/A	C	A	426.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1313
2	181163240	2:181163240_G/A	G	A	532.19	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,781
2	2080302	2:2080302_G/A	G	A	387.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:87:0,87,1000
2	235572037	2:235572037_G/A	G	A	427.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1054
2	2453547	2:2453547_C/T	C	T	259.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:96:0,96,1112
2	54958557	2:54958557_G/A	G	A	657.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1248
2	74683380	2:74683380_G/A	G	A	569.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,884
2	82488067	2:82488067_G/A	G	A	587.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1039
3	132255758	3:132255758_A/T	A	T	394.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1180
3	180089423	3:180089423_C/T	C	T	312.19	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,798
3	180874806	3:180874806_G/A	G	A	311.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1258
3	182271977	3:182271977_G/A	G	A	703.19	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1012
3	21558759	3:21558759_G/T	G	T	449.19	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,860
3	3882899	3:3882899_C/T	C	T	193.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:81:0,81,857
3	47947190	3:47947190_A/T	A	T	507.19	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,649
4	102854913	4:102854913_A/G	A	G	282.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1072
4	117391126	4:117391126_T/A	T	A	491.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1258
4	12449956	4:12449956_C/T	C	T	364.19	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1433
4	137142667	4:137142667_A/G	A	G	555.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1068
4	138331623	4:138331623_A/G	A	G	238.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1282
4	150483562	4:150483562_T/C	T	C	435.19	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1447
4	155169389	4:155169389_T/A	T	A	583.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1011
4	189341394	4:189341394_C/T	C	T	597.19	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,975
4	21328402	4:21328402_A/G	A	G	408.19	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1589
4	72976485	4:72976485_C/T	C	T	312.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1151
4	90306816	4:90306816_T/C	T	C	729.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1302
5	116993044	5:116993044_G/A	G	A	528.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1062
5	148501840	5:148501840_G/C	G	C	432.19	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,747
5	162153004	5:162153004_C/T	C	T	659.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,858
5	20998167	5:20998167_G/A	G	A	548.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,931
5	30143983	5:30143983_C/A	C	A	238.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1081
5	33780514	5:33780514_T/A	T	A	373.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1207
5	51494869	5:51494869_G/T	G	T	266.19	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1554
5	54161866	5:54161866_A/G	A	G	416.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1148
5	7114821	5:7114821_C/T	C	T	518.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1296
5	84365791	5:84365791_T/C	T	C	274.19	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,981
6	100364924	6:100364924_C/T	C	T	314.19	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1590
6	119775844	6:119775844_A/C	A	C	444.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:36:99:0,105,1208
6	123171273	6:123171273_G/A	G	A	215.19	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:45:0,45,458
6	136936682	6:136936682_T/C	T	C	431.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:84:0,84,943
6	25031663	6:25031663_C/A	C	A	284.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,924
6	50809518	6:50809518_C/T	C	T	363.19	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,920
6	65022714	6:65022714_A/G	A	G	328.19	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,877
6	65755742	6:65755742_C/A	C	A	528.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1246
6	68575856	6:68575856_T/A	T	A	299.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1275
6	93173566	6:93173566_A/C	A	C	513.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1253
6	9376869	6:9376869_T/C	T	C	392.19	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1589
7	10348034	7:10348034_C/G	C	G	449.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1439
7	107834333	7:107834333_C/T	C	T	376.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1173
7	108369499	7:108369499_G/A	G	A	356.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1263
7	121786001	7:121786001_A/C	A	C	456.19	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1012
7	125464793	7:125464793_A/C	A	C	379.19	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1561
7	14837963	7:14837963_C/T	C	T	458.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1193
7	15214897	7:15214897_A/G	A	G	590.19	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1443
7	39766069	7:39766069_C/T	C	T	398.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1156
7	4442411	7:4442411_A/T	A	T	222.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1140
7	53085191	7:53085191_C/T	C	T	336.19	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1383
7	62533062	7:62533062_G/A	G	A	214.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,873
7	64784583	7:64784583_G/A	G	A	510.19	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:57:0,57,590
7	69718856	7:69718856_T/C	T	C	683.19	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,668
7	69818014	7:69818014_C/A	C	A	535.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,914
7	81362557	7:81362557_C/T	C	T	709.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:78:0,78,790
7	85784802	7:85784802_A/G	A	G	408.19	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,793
7	95160107	7:95160107_A/G	A	G	405.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,941
8	142883381	8:142883381_C/T	C	T	479.19	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,813
8	20405307	8:20405307_G/A	G	A	340.19	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1612
8	43178672	8:43178672_G/T	G	T	304.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:90:0,90,1036
8	63715089	8:63715089_G/A	G	A	683.19	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1471
8	64865475	8:64865475_A/G	A	G	382.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1316
8	69372747	8:69372747_C/T	C	T	458.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,839
8	77500106	8:77500106_G/A	G	A	373.19	PASS	.	GT:AD:DP:GQ:PL	0/0:21,0:21:60:0,60,589
8	87841082	8:87841082_G/A	G	A	496.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1267
8	89953322	8:89953322_G/C	G	C	425.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1255
9	103303858	9:103303858_G/A	G	A	411.19	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,657
9	125453530	9:125453530_A/G	A	G	412.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1223
9	132553605	9:132553605_A/G	A	G	424.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1096
9	9520469	9:9520469_T/A	T	A	369.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,798
10	111621631	10:111621631_C/T	C	T	359.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1284
10	123198419	10:123198419_C/T	C	T	483.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1477
10	27504028	10:27504028_G/C	G	C	345.19	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,966
10	34364040	10:34364040_C/T	C	T	457.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,952
10	36225492	10:36225492_A/G	A	G	303.19	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:63:0,63,738
10	38982252	10:38982252_C/T	C	T	645.19	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,117,1283
10	66802743	10:66802743_G/A	G	A	573.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1293
10	9761614	10:9761614_T/A	T	A	244.19	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,960
11	109291800	11:109291800_G/A	G	A	429.19	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1265
11	111488697	11:111488697_C/G	C	G	222.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:78:0,78,878
11	111781054	11:111781054_G/A	G	A	208.19	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,719
11	12079630	11:12079630_C/T	C	T	331.19	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,765
11	17294642	11:17294642_G/A	G	A	527.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1339
11	42062035	11:42062035_T/C	T	C	267.19	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1488
11	70778113	11:70778113_C/A	C	A	347.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1057
11	95315373	11:95315373_C/T	C	T	615.19	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,147,1520
11	99105520	11:99105520_C/T	C	T	278.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1057
12	10824809	12:10824809_C/T	C	T	513.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,945
13	23994322	13:23994322_T/C	T	C	343.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,938
13	31044243	13:31044243_G/A	G	A	462.19	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:72:0,72,821
13	57216298	13:57216298_T/A	T	A	356.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1132
13	62103504	13:62103504_A/T	A	T	455.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1089
13	62695949	13:62695949_G/T	G	T	157.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:81:0,81,941
13	65731294	13:65731294_T/C	T	C	383.19	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1178
13	68136282	13:68136282_A/G	A	G	399.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1331
13	89528795	13:89528795_C/A	C	A	297.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1248
13	92201492	13:92201492_C/T	C	T	146.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:81:0,81,925
13	98177934	13:98177934_G/A	G	A	434.19	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1244
14	28188780	14:28188780_G/A	G	A	569.19	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,963
14	52642928	14:52642928_G/T	G	T	521.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,978
14	59001694	14:59001694_A/T	A	T	479.19	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1232
14	91253744	14:91253744_A/T	A	T	478.19	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:69:0,69,774
15	101235449	15:101235449_G/A	G	A	359.19	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1041
15	24441235	15:24441235_A/T	A	T	273.19	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,917
15	28029017	15:28029017_G/A	G	A	407.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:87:0,87,887
15	39859915	15:39859915_G/A	G	A	404.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,852
15	49363667	15:49363667_G/A	G	A	404.19	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1305
15	65028688	15:65028688_C/T	C	T	319.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:69:0,69,827
15	70039429	15:70039429_G/A	G	A	221.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,984
15	88719984	15:88719984_T/C	T	C	499.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1081
16	12242761	16:12242761_G/T	G	T	239.19	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1308
16	32180188	16:32180188_G/A	G	A	484.19	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1445
16	54615873	16:54615873_A/T	A	T	276.19	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1485
16	60073301	16:60073301_C/T	C	T	360.19	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1521
16	89099860	16:89099860_G/A	G	A	137.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:66:0,66,792
17	14943322	17:14943322_C/T	C	T	437.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,992
17	25424738	17:25424738_C/A	C	A	401.19	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1733
17	39853691	17:39853691_G/T	G	T	499.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1341
17	58413529	17:58413529_A/T	A	T	846.19	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1205
18	35048164	18:35048164_C/T	C	T	405.19	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1056
19	29827990	19:29827990_C/T	C	T	335.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,823
19	32498750	19:32498750_G/A	G	A	375.19	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,677
19	47859063	19:47859063_C/T	C	T	277.19	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:25:54:0,54,567
20	23718529	20:23718529_C/A	C	A	329.19	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1313
20	33099168	20:33099168_C/G	C	G	548.19	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,931
20	36660395	20:36660395_C/T	C	T	877.19	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1383
20	5317680	20:5317680_C/A	C	A	241.19	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1140
20	61470474	20:61470474_G/C	G	C	417.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,991
21	35268399	21:35268399_G/A	G	A	217.19	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,829
22	29508687	22:29508687_A/G	A	G	558.19	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,102,1120