File: liver1-sample.vcf

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r-bioc-mutationalpatterns 3.8.1%2Bdfsg-1
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##fileformat=VCFv4.1
##fileDate=20210324
##reference=file:///data_fedor8/common_data/GATK_b37_bundle/human_g1k_v37.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
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##contig=<ID=GL000192.1,length=547496,assembly="hg19">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	C30913DBiopsy
1	102208628	1:102208628_T/C	T	C	624.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1355
1	10956446	1:10956446_T/G	T	G	1691.17	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,991
1	154487852	1:154487852_C/A	C	A	1971.17	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:57:0,57,688
1	163342067	1:163342067_C/G	C	G	2007.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1497
1	189855215	1:189855215_A/G	A	G	1775.17	PASS	.	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2051
1	225003817	1:225003817_T/C	T	C	1529.17	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1815
1	228723255	1:228723255_C/T	C	T	2002.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1571
1	2926987	1:2926987_T/C	T	C	108.57	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:25:63:0,63,695
1	32004183	1:32004183_G/A	G	A	1922.17	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,935
1	40837978	1:40837978_C/A	C	A	1747.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1003
1	71213008	1:71213008_A/G	A	G	2335.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,114,1314
1	75435630	1:75435630_T/C	T	C	1693.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1597
1	81590331	1:81590331_C/A	C	A	141.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1297
1	83125747	1:83125747_G/T	G	T	200.57	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,147,1717
1	84088830	1:84088830_G/A	G	A	1299.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,141,1642
1	85390338	1:85390338_T/C	T	C	1458.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1185
1	88227989	1:88227989_C/T	C	T	1197.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:93:0,93,1106
1	96956287	1:96956287_A/T	A	T	2342.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:50:99:0,147,1751
2	105158010	2:105158010_C/A	C	A	406.57	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1814
2	107628312	2:107628312_G/A	G	A	1573.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1040
2	125916321	2:125916321_G/T	G	T	671.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1167
2	126623783	2:126623783_T/C	T	C	1414.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1624
2	127009701	2:127009701_G/A	G	A	2203.17	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1798
2	129906853	2:129906853_C/A	C	A	1632.17	PASS	.	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,159,1861
2	131104809	2:131104809_A/T	A	T	185.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1301
2	13739672	2:13739672_T/A	T	A	1981.17	PASS	.	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,153,1767
2	141967200	2:141967200_C/A	C	A	1843.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,1742
2	143185633	2:143185633_G/A	G	A	2184.17	PASS	.	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2096
2	162122518	2:162122518_A/C	A	C	154.57	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1166
2	168900595	2:168900595_T/G	T	G	1880.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1222
2	185598291	2:185598291_T/G	T	G	1485.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1568
2	185643858	2:185643858_C/T	C	T	1698.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1148
2	191242957	2:191242957_T/C	T	C	102.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:87:0,87,883
2	199591369	2:199591369_T/C	T	C	1904.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1325
2	204101072	2:204101072_A/C	A	C	125.56	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:75:0,75,818
2	212894104	2:212894104_C/T	C	T	2034.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1037
2	22026917	2:22026917_C/G	C	G	2135.17	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,894
2	223733524	2:223733524_T/C	T	C	1580.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,111,1319
2	227720180	2:227720180_A/G	A	G	1868.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1293
2	233395674	2:233395674_T/C	T	C	1635.17	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,706
2	31813647	2:31813647_C/G	C	G	1894.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1555
2	34065590	2:34065590_T/C	T	C	281.03	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,132,1459
2	40518198	2:40518198_G/A	G	A	2447.17	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,165,1918
2	41850838	2:41850838_T/C	T	C	1966.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1337
2	5608814	2:5608814_C/T	C	T	2192.17	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,169,1984
2	58131630	2:58131630_A/C	A	C	2124.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1468
2	64596136	2:64596136_G/C	G	C	1310.17	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:72:0,72,819
2	78346928	2:78346928_A/T	A	T	1800.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:43:99:0,123,1371
2	86472492	2:86472492_G/A	G	A	176.5	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1031
3	110156325	3:110156325_C/A	C	A	859.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1284
3	112922808	3:112922808_C/A	C	A	2155.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1261
3	116967536	3:116967536_G/T	G	T	1867.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1776
3	119429613	3:119429613_A/G	A	G	2238.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1402
3	121754142	3:121754142_G/A	G	A	1766.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:93:0,93,1111
3	127018549	3:127018549_G/A	G	A	2208.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1270
3	162099570	3:162099570_T/C	T	C	259.68	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:93:0,93,988
3	162927384	3:162927384_T/C	T	C	2061.17	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,141,1575
3	165459168	3:165459168_C/T	C	T	2187.17	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1158
3	168614257	3:168614257_C/T	C	T	252.36	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1211
3	171421760	3:171421760_G/T	G	T	2217.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1328
3	173782877	3:173782877_A/G	A	G	1854.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1331
3	178038337	3:178038337_G/A	G	A	2054.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,105,1235
3	180824093	3:180824093_C/T	C	T	1730.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,120,1300
3	20743411	3:20743411_C/G	C	G	1739.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1432
3	25822059	3:25822059_T/A	T	A	2023.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1297
3	34649057	3:34649057_G/C	G	C	1893.17	PASS	.	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2284
3	63896590	3:63896590_T/G	T	G	1537.17	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1011
3	67295460	3:67295460_A/G	A	G	1463.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1438
3	77382952	3:77382952_G/A	G	A	1890.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,129,1512
3	79879229	3:79879229_A/G	A	G	2215.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1627
3	83398014	3:83398014_A/G	A	G	2318.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,114,1320
3	83636083	3:83636083_C/A	C	A	1312.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1514
3	84589554	3:84589554_G/A	G	A	2029.17	PASS	.	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,1928
3	88002507	3:88002507_A/C	A	C	2426.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1706
3	88410279	3:88410279_A/G	A	G	2118.17	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1639
3	93587593	3:93587593_C/T	C	T	1445.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:35:99:0,102,1184
3	93954166	3:93954166_G/C	G	C	207.55	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:75:0,75,840
3	95701521	3:95701521_C/T	C	T	864.57	PASS	.	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1870
3	97041704	3:97041704_C/T	C	T	1457.17	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1501
4	106296345	4:106296345_G/C	G	C	1808.17	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1675
4	123635361	4:123635361_G/A	G	A	605.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1361
4	131315553	4:131315553_C/A	C	A	1746.17	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1265
4	13491000	4:13491000_C/T	C	T	1416.17	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,671
4	135219264	4:135219264_A/G	A	G	1060.57	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1722
4	146473967	4:146473967_A/G	A	G	2116.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1351
4	148940454	4:148940454_T/G	T	G	2014.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,1657
4	161627698	4:161627698_G/A	G	A	779.57	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,172,2054
4	164710211	4:164710211_C/A	C	A	1205.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1397
4	166377468	4:166377468_C/A	C	A	119.57	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1476
4	176945357	4:176945357_A/G	A	G	1671.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1409
4	180609610	4:180609610_A/C	A	C	2038.17	PASS	.	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1822
4	189604186	4:189604186_C/T	C	T	1877.17	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,150,1712
4	31282227	4:31282227_A/T	A	T	229.56	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1501
4	31924106	4:31924106_T/C	T	C	1761.17	PASS	.	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,1730
4	32453163	4:32453163_A/G	A	G	2160.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1374
4	42835916	4:42835916_T/G	T	G	1593.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1460
4	4517794	4:4517794_T/G	T	G	2143.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1043
4	47813068	4:47813068_G/A	G	A	2118.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1453
4	64343426	4:64343426_A/G	A	G	2235.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1324
4	66192865	4:66192865_A/G	A	G	1907.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,1688
4	88152809	4:88152809_C/T	C	T	1486.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:87:0,87,903
4	89903074	4:89903074_A/T	A	T	2031.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1181
4	9091948	4:9091948_G/A	G	A	1531.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1288
5	104489489	5:104489489_A/G	A	G	1967.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,159,1872
5	147443636	5:147443636_T/G	T	G	1682.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1663
5	153149865	5:153149865_C/T	C	T	2223.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1336
5	154480691	5:154480691_A/G	A	G	1569.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1517
5	156424106	5:156424106_C/T	C	T	1417.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1313
5	161273709	5:161273709_A/G	A	G	1944.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1300
5	163154983	5:163154983_T/A	T	A	2556.42	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1112
5	165043501	5:165043501_A/G	A	G	1810.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,1940
5	166558772	5:166558772_A/T	A	T	1988.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1299
5	25284726	5:25284726_C/A	C	A	612.57	PASS	.	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,156,1854
5	41622671	5:41622671_A/G	A	G	2220.17	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1776
5	5879550	5:5879550_G/A	G	A	2055.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1070
5	68489085	5:68489085_A/G	A	G	2232.17	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1250
5	78092961	5:78092961_A/C	A	C	1385.18	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,757
5	89626653	5:89626653_C/T	C	T	2291.17	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1152
5	98021182	5:98021182_A/G	A	G	137.07	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:75:0,75,783
6	103227236	6:103227236_C/T	C	T	2052.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1406
6	104089038	6:104089038_T/C	T	C	1722.17	PASS	.	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,172,2011
6	104409564	6:104409564_T/C	T	C	2269.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1432
6	115782397	6:115782397_C/G	C	G	1473.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,1962
6	123147977	6:123147977_A/G	A	G	1794.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:93:0,93,1053
6	123260381	6:123260381_A/C	A	C	1614.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:93:0,93,1061
6	131681783	6:131681783_T/A	T	A	1844.17	PASS	.	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,162,1867
6	141432714	6:141432714_C/A	C	A	767.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1572
6	154295986	6:154295986_G/C	G	C	2274.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1299
6	157534262	6:157534262_A/G	A	G	1520.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1182
6	168271795	6:168271795_G/C	G	C	222.08	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:57:0,57,637
6	16882574	6:16882574_G/A	G	A	2531.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1300
6	58596885	6:58596885_T/C	T	C	1010.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1499
6	71831036	6:71831036_C/G	C	G	1952.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1494
6	71983495	6:71983495_G/C	G	C	1853.17	PASS	.	GT:AD:DP:GQ:PL	0/0:66,0:67:99:0,193,2250
6	76234139	6:76234139_G/A	G	A	277.25	PASS	.	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,193,2197
6	87268815	6:87268815_C/T	C	T	1974.17	PASS	.	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,199,2301
6	9518978	6:9518978_C/A	C	A	129.78	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1302
7	105146399	7:105146399_T/G	T	G	1731.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1435
7	105443604	7:105443604_C/T	C	T	2104.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1165
7	109165152	7:109165152_C/T	C	T	1586.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1086
7	111549020	7:111549020_C/T	C	T	1474.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1252
7	114631903	7:114631903_A/G	A	G	1440.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,117,1339
7	121507063	7:121507063_G/A	G	A	2308.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,123,1335
7	134736551	7:134736551_C/A	C	A	637.57	PASS	.	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,199,2316
7	146391743	7:146391743_G/A	G	A	1848.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,123,1288
7	147271953	7:147271953_C/A	C	A	1867.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,129,1486
7	158563090	7:158563090_A/G	A	G	1499.19	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,967
7	19531248	7:19531248_C/T	C	T	1535.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,102,1113
7	19752706	7:19752706_C/T	C	T	2234.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,1960
7	23431551	7:23431551_A/G	A	G	2218.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:48:99:0,141,1631
7	50004619	7:50004619_T/G	T	G	2963.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1473
7	56391705	7:56391705_C/G	C	G	2025.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1167
7	64183797	7:64183797_C/T	C	T	782.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1619
7	65294248	7:65294248_C/T	C	T	309.08	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1266
7	95991469	7:95991469_T/C	T	C	887.57	PASS	.	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,184,2081
8	104674723	8:104674723_A/T	A	T	2159.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1522
8	108939802	8:108939802_A/G	A	G	1438.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1183
8	114264463	8:114264463_A/T	A	T	2222.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1052
8	118253796	8:118253796_C/T	C	T	1840.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1371
8	13730730	8:13730730_T/A	T	A	424.72	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,922
8	139958236	8:139958236_A/G	A	G	1788.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1086
8	20427532	8:20427532_T/A	T	A	2589.42	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1518
8	31001396	8:31001396_A/C	A	C	2252.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1584
8	41159230	8:41159230_A/C	A	C	1504.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:41:99:0,120,1427
8	66054584	8:66054584_G/T	G	T	1502.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1050
8	944588	8:944588_C/T	C	T	1719.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1132
9	109911663	9:109911663_C/T	C	T	2327.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1709
9	111697009	9:111697009_C/T	C	T	1704.17	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:57:0,57,687
9	112203706	9:112203706_T/G	T	G	111.33	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1201
9	118843744	9:118843744_T/C	T	C	1714.17	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,171,1947
9	119599095	9:119599095_A/C	A	C	1894.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1134
9	123950153	9:123950153_G/A	G	A	2313.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1400
9	124916854	9:124916854_C/A	C	A	2278.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,111,1277
9	129023720	9:129023720_C/A	C	A	893.57	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,126,1480
9	132753390	9:132753390_T/G	T	G	1807.17	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:78:0,78,882
9	13798608	9:13798608_A/C	A	C	1444.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,99,1122
9	21729671	9:21729671_G/A	G	A	1638.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1369
9	46767526	9:46767526_A/C	A	C	1069.17	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,878
9	76737283	9:76737283_T/G	T	G	680.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:39:99:0,114,1364
10	106498647	10:106498647_G/T	G	T	1241.57	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1005
10	112767721	10:112767721_C/G	C	G	2436.17	PASS	.	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,193,2245
10	113038882	10:113038882_A/G	A	G	159.61	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:60:0,60,556
10	1147555	10:1147555_G/T	G	T	1787.17	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,823
10	19899561	10:19899561_A/G	A	G	1758.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,144,1687
10	2984732	10:2984732_C/T	C	T	1707.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1014
10	48507814	10:48507814_A/T	A	T	1865.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1504
10	5388184	10:5388184_C/T	C	T	2250.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1544
10	58332306	10:58332306_T/A	T	A	814.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1064
10	6403981	10:6403981_C/T	C	T	1499.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1402
10	65297033	10:65297033_G/A	G	A	697.57	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1634
10	73905020	10:73905020_T/C	T	C	2206.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1443
10	78508583	10:78508583_T/C	T	C	1752.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1388
10	86212175	10:86212175_T/G	T	G	2592.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1451
10	87548616	10:87548616_T/C	T	C	823.57	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,977
10	91580386	10:91580386_G/A	G	A	1611.17	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,850
10	91919182	10:91919182_C/T	C	T	284.54	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:57:0,57,599
10	91919191	10:91919191_C/G	C	G	258.54	PASS	.	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,758
10	93065218	10:93065218_G/T	G	T	2139.17	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1751
10	94052076	10:94052076_A/G	A	G	1335.17	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,989
11	102893238	11:102893238_G/T	G	T	2458.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1329
11	113337642	11:113337642_A/G	A	G	1820.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,129,1520
11	121606575	11:121606575_T/C	T	C	198.03	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:66:0,66,634
11	131773854	11:131773854_A/G	A	G	1871.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1108
11	133449166	11:133449166_G/A	G	A	1434.17	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,709
11	34031061	11:34031061_C/T	C	T	1066.17	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:72:0,72,829
11	34237157	11:34237157_C/T	C	T	1844.17	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:75:0,75,872
11	50691166	11:50691166_C/A	C	A	147.75	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1117
11	7321487	11:7321487_A/T	A	T	1899.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1111
11	78073281	11:78073281_C/T	C	T	1970.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,165,1906
11	84828172	11:84828172_C/T	C	T	1864.17	PASS	.	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,184,2132
11	88556801	11:88556801_T/C	T	C	1757.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1349
11	98858479	11:98858479_C/A	C	A	1853.17	PASS	.	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1873
12	107656126	12:107656126_A/C	A	C	2034.17	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1575
12	110834179	12:110834179_C/T	C	T	1011.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1074
12	111338138	12:111338138_G/A	G	A	2340.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1187
12	16789260	12:16789260_G/A	G	A	1762.17	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,753
12	28313085	12:28313085_A/T	A	T	2087.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1513
12	39610587	12:39610587_C/A	C	A	1737.17	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1187
12	52910073	12:52910073_G/T	G	T	1935.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1213
12	61873674	12:61873674_G/A	G	A	2208.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1234
12	67421631	12:67421631_C/T	C	T	1862.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1219
12	69909672	12:69909672_A/C	A	C	212.87	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:87:0,87,902
12	73324929	12:73324929_A/G	A	G	1785.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1592
12	80811972	12:80811972_G/T	G	T	732.57	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1427
12	81923181	12:81923181_C/T	C	T	725.57	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1392
12	83198086	12:83198086_A/T	A	T	1196.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1333
12	91561822	12:91561822_A/T	A	T	1671.17	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:78:0,78,911
12	96994772	12:96994772_A/G	A	G	1821.17	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1233
12	97430678	12:97430678_T/G	T	G	158.97	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:87:0,87,949
13	104574502	13:104574502_T/A	T	A	1570.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,144,1635
13	110878894	13:110878894_A/G	A	G	801.57	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1775
13	112627019	13:112627019_G/C	G	C	1931.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1325
13	24592720	13:24592720_C/T	C	T	1709.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1137
13	36451587	13:36451587_G/T	G	T	2800.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,117,1343
13	38933161	13:38933161_C/T	C	T	1774.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,123,1484
13	45214069	13:45214069_G/A	G	A	2448.17	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,999
13	47989060	13:47989060_T/C	T	C	2267.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1549
13	53725639	13:53725639_C/T	C	T	846.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1320
13	60156864	13:60156864_G/A	G	A	2284.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1356
13	63311716	13:63311716_T/C	T	C	1672.17	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,165,1871
13	74913939	13:74913939_G/T	G	T	1921.17	PASS	.	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1876
13	94069143	13:94069143_C/T	C	T	1024.57	PASS	.	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,156,1831
14	27914623	14:27914623_T/A	T	A	3553.42	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1803
14	38716350	14:38716350_C/T	C	T	479.62	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1551
14	49158605	14:49158605_A/G	A	G	1800.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1116
14	60550280	14:60550280_C/T	C	T	2250.17	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,117,1375
14	60723228	14:60723228_A/G	A	G	1494.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1435
14	62658603	14:62658603_T/A	T	A	1805.17	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,992
14	63589714	14:63589714_G/T	G	T	1507.17	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,970
14	81338503	14:81338503_C/T	C	T	2227.17	PASS	.	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,181,2087
14	94553200	14:94553200_T/G	T	G	1280.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1485
14	99970689	14:99970689_T/A	T	A	1964.17	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,695
15	24841505	15:24841505_G/T	G	T	1735.17	PASS	.	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,178,2092
15	33525328	15:33525328_G/A	G	A	2062.17	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1148
15	35759816	15:35759816_T/A	T	A	1723.17	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,1735
15	38421844	15:38421844_C/T	C	T	2082.17	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1169
15	54155890	15:54155890_A/T	A	T	2177.17	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1741
15	58736190	15:58736190_A/T	A	T	106.9	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,711
15	59356712	15:59356712_G/A	G	A	1149.21	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,709
15	83494363	15:83494363_G/A	G	A	1137.17	PASS	.	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,644
15	90298694	15:90298694_G/T	G	T	2045.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1045
15	94463959	15:94463959_T/C	T	C	1494.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1169
16	14734608	16:14734608_A/C	A	C	123.62	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:87:0,87,995
16	51744848	16:51744848_A/T	A	T	2189.17	PASS	.	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,156,1828
16	6013491	16:6013491_C/T	C	T	1989.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1639
16	6907831	16:6907831_T/C	T	C	1914.17	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1579
16	82346859	16:82346859_G/T	G	T	2011.17	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1163
17	17883232	17:17883232_A/G	A	G	1743.17	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,994
17	31127001	17:31127001_A/C	A	C	1687.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:90:0,90,1009
17	31275310	17:31275310_C/T	C	T	1348.17	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1131
17	43478003	17:43478003_G/A	G	A	2093.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1006
17	53385088	17:53385088_T/C	T	C	1911.17	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,958
17	54942062	17:54942062_A/G	A	G	1815.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,147,1654
17	6009129	17:6009129_C/G	C	G	1660.17	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1137
17	61297219	17:61297219_A/T	A	T	2041.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1341
17	64296061	17:64296061_G/C	G	C	2135.17	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1413
17	6846265	17:6846265_A/C	A	C	2034.17	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1365
17	9288771	17:9288771_C/A	C	A	262.68	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1692
18	22057361	18:22057361_A/G	A	G	1839.17	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1188
18	23369763	18:23369763_C/T	C	T	2113.17	PASS	.	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,1912
18	29121751	18:29121751_A/G	A	G	1989.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1751
18	37490002	18:37490002_C/T	C	T	1844.17	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1512
18	43416587	18:43416587_G/A	G	A	1825.17	PASS	.	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,950
18	5690874	18:5690874_C/A	C	A	1805.17	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1065
18	58908017	18:58908017_A/G	A	G	1761.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1731
18	59831897	18:59831897_T/G	T	G	2181.17	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,147,1706
19	14886697	19:14886697_G/T	G	T	1216.18	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:23:54:0,54,598
19	56382919	19:56382919_A/T	A	T	376.55	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1184
20	11035349	20:11035349_G/C	G	C	198.81	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:66:0,66,676
20	11493356	20:11493356_C/T	C	T	1019.17	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:87:0,87,968
20	15901867	20:15901867_G/A	G	A	935.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1009
20	20797206	20:20797206_A/G	A	G	1703.17	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1615
20	37437892	20:37437892_C/G	C	G	183.18	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:66:0,66,640
20	38395288	20:38395288_C/T	C	T	1891.17	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,141,1621
20	40383023	20:40383023_G/A	G	A	685.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1561
21	24340726	21:24340726_G/C	G	C	1382.17	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1341
21	29966508	21:29966508_T/C	T	C	2282.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1427
21	32850740	21:32850740_C/A	C	A	1784.17	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:45:99:0,132,1496
22	29417782	22:29417782_T/C	T	C	1955.17	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1428
22	41045713	22:41045713_G/A	G	A	975.18	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:66:0,66,765