1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293
|
##fileformat=VCFv4.1
##fileDate=20210324
##reference=file:///data_fedor8/common_data/GATK_b37_bundle/human_g1k_v37.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=1,length=249250621,assembly="hg19">
##contig=<ID=2,length=243199373,assembly="hg19">
##contig=<ID=3,length=198022430,assembly="hg19">
##contig=<ID=4,length=191154276,assembly="hg19">
##contig=<ID=5,length=180915260,assembly="hg19">
##contig=<ID=6,length=171115067,assembly="hg19">
##contig=<ID=7,length=159138663,assembly="hg19">
##contig=<ID=8,length=146364022,assembly="hg19">
##contig=<ID=9,length=141213431,assembly="hg19">
##contig=<ID=10,length=135534747,assembly="hg19">
##contig=<ID=11,length=135006516,assembly="hg19">
##contig=<ID=12,length=133851895,assembly="hg19">
##contig=<ID=13,length=115169878,assembly="hg19">
##contig=<ID=14,length=107349540,assembly="hg19">
##contig=<ID=15,length=102531392,assembly="hg19">
##contig=<ID=16,length=90354753,assembly="hg19">
##contig=<ID=17,length=81195210,assembly="hg19">
##contig=<ID=18,length=78077248,assembly="hg19">
##contig=<ID=19,length=59128983,assembly="hg19">
##contig=<ID=20,length=63025520,assembly="hg19">
##contig=<ID=21,length=48129895,assembly="hg19">
##contig=<ID=22,length=51304566,assembly="hg19">
##contig=<ID=X,length=155270560,assembly="hg19">
##contig=<ID=Y,length=59373566,assembly="hg19">
##contig=<ID=MT,length=16569,assembly="hg19">
##contig=<ID=GL000207.1,length=4262,assembly="hg19">
##contig=<ID=GL000226.1,length=15008,assembly="hg19">
##contig=<ID=GL000229.1,length=19913,assembly="hg19">
##contig=<ID=GL000231.1,length=27386,assembly="hg19">
##contig=<ID=GL000210.1,length=27682,assembly="hg19">
##contig=<ID=GL000239.1,length=33824,assembly="hg19">
##contig=<ID=GL000235.1,length=34474,assembly="hg19">
##contig=<ID=GL000201.1,length=36148,assembly="hg19">
##contig=<ID=GL000247.1,length=36422,assembly="hg19">
##contig=<ID=GL000245.1,length=36651,assembly="hg19">
##contig=<ID=GL000197.1,length=37175,assembly="hg19">
##contig=<ID=GL000203.1,length=37498,assembly="hg19">
##contig=<ID=GL000246.1,length=38154,assembly="hg19">
##contig=<ID=GL000249.1,length=38502,assembly="hg19">
##contig=<ID=GL000196.1,length=38914,assembly="hg19">
##contig=<ID=GL000248.1,length=39786,assembly="hg19">
##contig=<ID=GL000244.1,length=39929,assembly="hg19">
##contig=<ID=GL000238.1,length=39939,assembly="hg19">
##contig=<ID=GL000202.1,length=40103,assembly="hg19">
##contig=<ID=GL000234.1,length=40531,assembly="hg19">
##contig=<ID=GL000232.1,length=40652,assembly="hg19">
##contig=<ID=GL000206.1,length=41001,assembly="hg19">
##contig=<ID=GL000240.1,length=41933,assembly="hg19">
##contig=<ID=GL000236.1,length=41934,assembly="hg19">
##contig=<ID=GL000241.1,length=42152,assembly="hg19">
##contig=<ID=GL000243.1,length=43341,assembly="hg19">
##contig=<ID=GL000242.1,length=43523,assembly="hg19">
##contig=<ID=GL000230.1,length=43691,assembly="hg19">
##contig=<ID=GL000237.1,length=45867,assembly="hg19">
##contig=<ID=GL000233.1,length=45941,assembly="hg19">
##contig=<ID=GL000204.1,length=81310,assembly="hg19">
##contig=<ID=GL000198.1,length=90085,assembly="hg19">
##contig=<ID=GL000208.1,length=92689,assembly="hg19">
##contig=<ID=GL000191.1,length=106433,assembly="hg19">
##contig=<ID=GL000227.1,length=128374,assembly="hg19">
##contig=<ID=GL000228.1,length=129120,assembly="hg19">
##contig=<ID=GL000214.1,length=137718,assembly="hg19">
##contig=<ID=GL000221.1,length=155397,assembly="hg19">
##contig=<ID=GL000209.1,length=159169,assembly="hg19">
##contig=<ID=GL000218.1,length=161147,assembly="hg19">
##contig=<ID=GL000220.1,length=161802,assembly="hg19">
##contig=<ID=GL000213.1,length=164239,assembly="hg19">
##contig=<ID=GL000211.1,length=166566,assembly="hg19">
##contig=<ID=GL000199.1,length=169874,assembly="hg19">
##contig=<ID=GL000217.1,length=172149,assembly="hg19">
##contig=<ID=GL000216.1,length=172294,assembly="hg19">
##contig=<ID=GL000215.1,length=172545,assembly="hg19">
##contig=<ID=GL000205.1,length=174588,assembly="hg19">
##contig=<ID=GL000219.1,length=179198,assembly="hg19">
##contig=<ID=GL000224.1,length=179693,assembly="hg19">
##contig=<ID=GL000223.1,length=180455,assembly="hg19">
##contig=<ID=GL000195.1,length=182896,assembly="hg19">
##contig=<ID=GL000212.1,length=186858,assembly="hg19">
##contig=<ID=GL000222.1,length=186861,assembly="hg19">
##contig=<ID=GL000200.1,length=187035,assembly="hg19">
##contig=<ID=GL000193.1,length=189789,assembly="hg19">
##contig=<ID=GL000194.1,length=191469,assembly="hg19">
##contig=<ID=GL000225.1,length=211173,assembly="hg19">
##contig=<ID=GL000192.1,length=547496,assembly="hg19">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT C30913DBiopsy
1 117699962 1:117699962_A/T A T 764.57 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1266
1 192883853 1:192883853_A/G A G 1346.57 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,135,1531
1 206929013 1:206929013_G/C G C 856.57 PASS . GT:AD:DP:GQ:PL 0/0:29,0:30:87:0,87,1026
1 210093253 1:210093253_G/A G A 1126.57 PASS . GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,177,2001
1 223142271 1:223142271_G/T G T 425.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1069
1 227471392 1:227471392_G/A G A 814.57 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1339
1 34036963 1:34036963_A/C A C 1070.85 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,752
1 49116576 1:49116576_T/A T A 1051.55 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1456
1 52938698 1:52938698_T/C T C 849.57 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,922
1 54077983 1:54077983_G/T G T 689.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:84:0,84,983
1 58624557 1:58624557_C/A C A 743.61 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,751
1 80369131 1:80369131_C/G C G 740.69 PASS . GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,162,1902
1 98932701 1:98932701_C/A C A 844.61 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,970
2 136312383 2:136312383_A/G A G 1001.6 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1175
2 140340686 2:140340686_A/T A T 725.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,138,1563
2 151684587 2:151684587_T/C T C 635.57 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,902
2 162122518 2:162122518_A/C A C 154.57 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1166
2 186264477 2:186264477_G/C G C 1012.56 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,1265
2 199621182 2:199621182_A/G A G 1168.55 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1390
2 201237356 2:201237356_C/G C G 987.57 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:93:0,93,1096
2 216600552 2:216600552_G/T G T 800.57 PASS . GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,132,1526
2 236891267 2:236891267_T/G T G 915.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1109
2 241347259 2:241347259_A/G A G 1070.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:78:0,78,883
2 35142187 2:35142187_C/T C T 760.59 PASS . GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,187,2162
2 37052898 2:37052898_G/C G C 1124.57 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1136
2 55252862 2:55252862_C/A C A 1117.57 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1218
2 68043603 2:68043603_C/G C G 1072.57 PASS . GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,156,1843
3 104342679 3:104342679_G/T G T 978.57 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1491
3 115591064 3:115591064_G/T G T 771.57 PASS . GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,138,1624
3 149029797 3:149029797_G/T G T 954.57 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1336
3 165251109 3:165251109_C/T C T 705.57 PASS . GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,156,1789
3 165815827 3:165815827_G/A G A 744.57 PASS . GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,190,2175
3 173199460 3:173199460_G/A G A 1056.57 PASS . GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,150,1761
3 174175524 3:174175524_C/T C T 812.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,141,1623
3 177879677 3:177879677_A/C A C 632.58 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1393
3 179628159 3:179628159_G/T G T 2844.42 PASS . GT:AD:DP:GQ:PL 0/0:46,0:47:99:0,138,1593
3 28589462 3:28589462_A/T A T 1196.57 PASS . GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,144,1696
3 51041084 3:51041084_A/G A G 698.58 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1362
3 64286806 3:64286806_T/A T A 376.69 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1263
3 75146644 3:75146644_C/T C T 796.56 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,696
3 80577080 3:80577080_C/T C T 1285.57 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,135,1585
3 83757514 3:83757514_T/C T C 828.55 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:87:0,87,999
4 107919071 4:107919071_G/T G T 736.57 PASS . GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,168,1960
4 111771290 4:111771290_C/A C A 910.61 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1467
4 129283986 4:129283986_G/A G A 1233.57 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,132,1520
4 130415399 4:130415399_C/T C T 953.57 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1467
4 136474272 4:136474272_C/G C G 1177.56 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1493
4 15112319 4:15112319_G/T G T 914.57 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1448
4 157298740 4:157298740_G/T G T 1327.55 PASS . GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,172,1997
4 182360347 4:182360347_G/A G A 751.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:69:0,69,812
4 21016607 4:21016607_A/C A C 1012.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:32:93:0,93,1052
4 28536176 4:28536176_T/A T A 586.97 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1391
4 31282227 4:31282227_A/T A T 229.56 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1501
4 31387074 4:31387074_G/A G A 776.55 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1441
4 32467596 4:32467596_A/T A T 1413.08 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1423
4 42582841 4:42582841_G/C G C 968.55 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1404
4 68697779 4:68697779_A/G A G 1318.57 PASS . GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1576
4 81870474 4:81870474_T/C T C 1220.57 PASS . GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,150,1728
4 90245063 4:90245063_A/G A G 1266.26 PASS . GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,175,2006
5 123879052 5:123879052_T/G T G 1051.57 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,123,1444
5 123879053 5:123879053_G/A G A 1011.57 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1486
5 164613352 5:164613352_C/T C T 1446.55 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1342
5 21644868 5:21644868_C/G C G 1270.55 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1181
5 31108134 5:31108134_C/A C A 1049.57 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1299
5 36092112 5:36092112_C/T C T 688.57 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1288
5 44935917 5:44935917_T/A T A 845.61 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1142
5 86448538 5:86448538_C/G C G 580.57 PASS . GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,165,1883
6 114262744 6:114262744_G/A G A 1100.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,135,1571
6 117717730 6:117717730_T/C T C 1031.58 PASS . GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,150,1707
6 13908007 6:13908007_C/A C A 1046.35 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1065
6 149524348 6:149524348_G/T G T 811.57 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1324
6 161237739 6:161237739_A/G A G 823.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1192
6 164000726 6:164000726_G/T G T 1106.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1218
6 16845891 6:16845891_G/A G A 1061.57 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,1244
6 170903067 6:170903067_C/T C T 965.57 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1434
6 20604669 6:20604669_A/G A G 1320.57 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1495
6 31240964 6:31240964_T/C T C 680.57 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,949
6 35604627 6:35604627_C/A C A 1018.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:78:0,78,884
6 40620264 6:40620264_G/A G A 1103.57 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,135,1545
6 43036751 6:43036751_C/G C G 743.56 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:57:0,57,659
6 48479830 6:48479830_A/G A G 642.69 PASS . GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1534
6 48714760 6:48714760_A/C A C 707.54 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1070
6 55890274 6:55890274_A/G A G 513.55 PASS . GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,171,1971
6 56789768 6:56789768_C/T C T 700.35 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1398
6 66001064 6:66001064_G/T G T 960.55 PASS . GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,132,1563
6 6744872 6:6744872_C/A C A 941.57 PASS . GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,150,1721
6 77516579 6:77516579_T/A T A 887.55 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,123,1432
6 78072850 6:78072850_T/G T G 304.57 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1036
6 85564152 6:85564152_C/G C G 787.55 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1052
6 96468763 6:96468763_T/A T A 742.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:27:78:0,78,923
7 100879542 7:100879542_G/T G T 708.57 PASS . GT:AD:DP:GQ:PL 0/0:24,0:24:69:0,69,782
7 124097316 7:124097316_A/C A C 1005.56 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1059
7 149553418 7:149553418_C/T C T 957.56 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1149
7 156902006 7:156902006_G/C G C 764.57 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1150
7 29504719 7:29504719_C/A C A 1162.57 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1183
7 44675935 7:44675935_G/A G A 1128.89 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1146
7 83990924 7:83990924_A/C A C 709.55 PASS . GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,150,1669
7 99271389 7:99271389_G/C G C 1196.58 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1133
8 104187068 8:104187068_C/G C G 679.57 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1251
8 106168624 8:106168624_G/T G T 965.57 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1060
8 109058680 8:109058680_A/C A C 892.56 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1410
8 11462081 8:11462081_G/T G T 1148.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,802
8 128583370 8:128583370_G/A G A 807.46 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,129,1512
8 129642763 8:129642763_C/G C G 1243.57 PASS . GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,156,1804
8 137053909 8:137053909_G/A G A 844.55 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1325
8 16468451 8:16468451_A/T A T 1001.53 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1431
8 25225715 8:25225715_G/C G C 975.32 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,958
8 25678444 8:25678444_C/A C A 820.57 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1197
8 47288883 8:47288883_C/T C T 956.57 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1506
8 5839792 8:5839792_G/A G A 782.57 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1224
8 64891496 8:64891496_A/G A G 886.56 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1176
8 74935213 8:74935213_G/A G A 1041.56 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,875
8 83013347 8:83013347_G/A G A 827.57 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1366
9 101478636 9:101478636_C/G C G 904.57 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1357
9 118647871 9:118647871_T/G T G 680.56 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1305
9 2120871 9:2120871_A/G A G 1061.98 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,1196
9 22808047 9:22808047_T/G T G 784.55 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1181
9 24915104 9:24915104_C/A C A 676.57 PASS . GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,150,1744
9 29300960 9:29300960_G/A G A 979.55 PASS . GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,196,2251
9 74381648 9:74381648_G/T G T 1094.56 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1332
10 101220890 10:101220890_G/T G T 804.57 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1509
10 1056380 10:1056380_T/G T G 739.57 PASS . GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1148
10 110845147 10:110845147_G/A G A 569.57 PASS . GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,144,1642
10 111582010 10:111582010_C/T C T 1047.56 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:93:0,93,1069
10 116592687 10:116592687_G/C G C 1096.57 PASS . GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1373
10 119748817 10:119748817_C/A C A 1241.56 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1337
10 16858922 10:16858922_T/G T G 1098.73 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,764
10 30938760 10:30938760_G/A G A 876.57 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1081
10 4571896 10:4571896_A/G A G 700.02 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1080
10 68227809 10:68227809_T/G T G 759.57 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1268
10 68227832 10:68227832_A/C A C 870.57 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1453
10 75197910 10:75197910_A/G A G 1092.56 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,830
10 75388744 10:75388744_A/G A G 1292.62 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1148
10 75561780 10:75561780_T/G T G 421.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1086
10 78530918 10:78530918_G/A G A 868.57 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1261
11 103868903 11:103868903_G/C G C 884.33 PASS . GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,181,2090
11 124890902 11:124890902_A/G A G 1151.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,138,1503
11 28578048 11:28578048_T/G T G 110.09 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,768
11 38477060 11:38477060_A/C A C 173.55 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1238
11 41262255 11:41262255_A/G A G 1263.17 PASS . GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,153,1729
11 45220608 11:45220608_C/G C G 1199.56 PASS . GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1483
11 61589586 11:61589586_C/T C T 806.62 PASS . GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,989
11 76538881 11:76538881_C/G C G 1013.56 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,105,1224
12 104367920 12:104367920_C/T C T 979.57 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1101
12 10939491 12:10939491_A/G A G 828.57 PASS . GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,129,1468
12 117911948 12:117911948_C/T C T 810.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1165
12 130431556 12:130431556_C/A C A 885.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1208
12 130832741 12:130832741_T/A T A 799.55 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1471
12 22454969 12:22454969_A/G A G 975.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,138,1560
12 23184659 12:23184659_T/G T G 701.83 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,768
12 47308147 12:47308147_T/A T A 713.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,883
12 58129785 12:58129785_T/A T A 328.6 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1224
12 85362581 12:85362581_A/C A C 1155.57 PASS . GT:AD:DP:GQ:PL 0/0:49,0:50:99:0,144,1634
12 86274150 12:86274150_G/A G A 786.55 PASS . GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1213
12 88743911 12:88743911_C/T C T 632.57 PASS . GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,911
12 90013303 12:90013303_C/T C T 745.57 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1389
12 90634362 12:90634362_C/T C T 965.62 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1181
13 102194305 13:102194305_T/G T G 958.55 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1271
13 108951886 13:108951886_C/T C T 794.57 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1134
13 112180700 13:112180700_G/A G A 934.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,833
13 25785101 13:25785101_C/T C T 835.57 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1061
13 38971364 13:38971364_G/A G A 782.73 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1049
13 50050713 13:50050713_C/G C G 783.55 PASS . GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1406
13 55502390 13:55502390_G/C G C 728.57 PASS . GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,168,1977
13 57771681 13:57771681_A/G A G 804.67 PASS . GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,175,2058
13 59377594 13:59377594_T/C T C 1051.75 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1090
14 102368651 14:102368651_G/A G A 718.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,879
14 20603465 14:20603465_C/T C T 1191.57 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1180
14 35904559 14:35904559_G/C G C 510.33 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1468
14 55255527 14:55255527_C/T C T 866.56 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1043
14 73874830 14:73874830_G/A G A 828.57 PASS . GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,684
14 75476496 14:75476496_C/T C T 100.79 PASS . GT:AD:DP:GQ:PL 0/0:31,0:31:93:0,93,1044
14 97593116 14:97593116_C/T C T 942.57 PASS . GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,147,1523
15 36845071 15:36845071_C/A C A 1122.57 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1462
15 43294546 15:43294546_G/A G A 588.57 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:78:0,78,934
15 60706041 15:60706041_T/C T C 844.57 PASS . GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1541
15 86376657 15:86376657_C/T C T 900.59 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,811
16 59730527 16:59730527_C/T C T 1196.57 PASS . GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,123,1294
16 76828865 16:76828865_G/A G A 984.57 PASS . GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,177,2066
17 11883879 17:11883879_A/G A G 167.56 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:63:0,63,744
17 31856983 17:31856983_C/T C T 947.57 PASS . GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,141,1660
17 54108694 17:54108694_G/T G T 1010.56 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1263
17 58523958 17:58523958_G/T G T 1101.58 PASS . GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1302
17 64857977 17:64857977_C/G C G 847.57 PASS . GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,856
17 73059674 17:73059674_C/T C T 1011.55 PASS . GT:AD:DP:GQ:PL 0/0:26,0:26:78:0,78,905
18 14645639 18:14645639_C/G C G 991.57 PASS . GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,165,1855
18 3934394 18:3934394_C/G C G 994.57 PASS . GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,123,1439
18 67583114 18:67583114_A/C A C 916.57 PASS . GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,144,1698
18 71538752 18:71538752_C/A C A 1315.57 PASS . GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,150,1794
18 7628489 18:7628489_C/T C T 873.55 PASS . GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1139
18 76922757 18:76922757_A/G A G 1070.56 PASS . GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,129,1511
19 18514248 19:18514248_G/A G A 743.56 PASS . GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,725
19 39439869 19:39439869_G/A G A 543.1 PASS . GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,764
19 40683604 19:40683604_C/A C A 1155.57 PASS . GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,983
21 35595433 21:35595433_C/A C A 658.62 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1051
22 17620868 22:17620868_C/A C A 675.69 PASS . GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,723
22 24147984 22:24147984_G/T G T 924.57 PASS . GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1044
22 26400075 22:26400075_A/G A G 596.35 PASS . GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1474
22 28802401 22:28802401_G/A G A 820.57 PASS . GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1163
22 40051541 22:40051541_G/A G A 1227.55 PASS . GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1147
|