File: liver3-sample.vcf

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r-bioc-mutationalpatterns 3.8.1%2Bdfsg-1
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##fileformat=VCFv4.1
##fileDate=20210324
##reference=file:///data_fedor8/common_data/GATK_b37_bundle/human_g1k_v37.fasta
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##contig=<ID=1,length=249250621,assembly="hg19">
##contig=<ID=2,length=243199373,assembly="hg19">
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##contig=<ID=GL000192.1,length=547496,assembly="hg19">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	C30913DBiopsy
1	117699962	1:117699962_A/T	A	T	764.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,111,1266
1	192883853	1:192883853_A/G	A	G	1346.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1531
1	206929013	1:206929013_G/C	G	C	856.57	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:30:87:0,87,1026
1	210093253	1:210093253_G/A	G	A	1126.57	PASS	.	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2001
1	223142271	1:223142271_G/T	G	T	425.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1069
1	227471392	1:227471392_G/A	G	A	814.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,111,1339
1	34036963	1:34036963_A/C	A	C	1070.85	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:66:0,66,752
1	49116576	1:49116576_T/A	T	A	1051.55	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1456
1	52938698	1:52938698_T/C	T	C	849.57	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:81:0,81,922
1	54077983	1:54077983_G/T	G	T	689.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:84:0,84,983
1	58624557	1:58624557_C/A	C	A	743.61	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,751
1	80369131	1:80369131_C/G	C	G	740.69	PASS	.	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1902
1	98932701	1:98932701_C/A	C	A	844.61	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:81:0,81,970
2	136312383	2:136312383_A/G	A	G	1001.6	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1175
2	140340686	2:140340686_A/T	A	T	725.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1563
2	151684587	2:151684587_T/C	T	C	635.57	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:78:0,78,902
2	162122518	2:162122518_A/C	A	C	154.57	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1166
2	186264477	2:186264477_G/C	G	C	1012.56	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1265
2	199621182	2:199621182_A/G	A	G	1168.55	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1390
2	201237356	2:201237356_C/G	C	G	987.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:93:0,93,1096
2	216600552	2:216600552_G/T	G	T	800.57	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1526
2	236891267	2:236891267_T/G	T	G	915.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1109
2	241347259	2:241347259_A/G	A	G	1070.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,883
2	35142187	2:35142187_C/T	C	T	760.59	PASS	.	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,187,2162
2	37052898	2:37052898_G/C	G	C	1124.57	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1136
2	55252862	2:55252862_C/A	C	A	1117.57	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1218
2	68043603	2:68043603_C/G	C	G	1072.57	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1843
3	104342679	3:104342679_G/T	G	T	978.57	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1491
3	115591064	3:115591064_G/T	G	T	771.57	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,138,1624
3	149029797	3:149029797_G/T	G	T	954.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1336
3	165251109	3:165251109_C/T	C	T	705.57	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1789
3	165815827	3:165815827_G/A	G	A	744.57	PASS	.	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,190,2175
3	173199460	3:173199460_G/A	G	A	1056.57	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,150,1761
3	174175524	3:174175524_C/T	C	T	812.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1623
3	177879677	3:177879677_A/C	A	C	632.58	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1393
3	179628159	3:179628159_G/T	G	T	2844.42	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:47:99:0,138,1593
3	28589462	3:28589462_A/T	A	T	1196.57	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1696
3	51041084	3:51041084_A/G	A	G	698.58	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1362
3	64286806	3:64286806_T/A	T	A	376.69	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1263
3	75146644	3:75146644_C/T	C	T	796.56	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:60:0,60,696
3	80577080	3:80577080_C/T	C	T	1285.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1585
3	83757514	3:83757514_T/C	T	C	828.55	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,999
4	107919071	4:107919071_G/T	G	T	736.57	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,168,1960
4	111771290	4:111771290_C/A	C	A	910.61	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1467
4	129283986	4:129283986_G/A	G	A	1233.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,132,1520
4	130415399	4:130415399_C/T	C	T	953.57	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1467
4	136474272	4:136474272_C/G	C	G	1177.56	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1493
4	15112319	4:15112319_G/T	G	T	914.57	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1448
4	157298740	4:157298740_G/T	G	T	1327.55	PASS	.	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,172,1997
4	182360347	4:182360347_G/A	G	A	751.57	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:69:0,69,812
4	21016607	4:21016607_A/C	A	C	1012.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:32:93:0,93,1052
4	28536176	4:28536176_T/A	T	A	586.97	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1391
4	31282227	4:31282227_A/T	A	T	229.56	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1501
4	31387074	4:31387074_G/A	G	A	776.55	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1441
4	32467596	4:32467596_A/T	A	T	1413.08	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1423
4	42582841	4:42582841_G/C	G	C	968.55	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1404
4	68697779	4:68697779_A/G	A	G	1318.57	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,135,1576
4	81870474	4:81870474_T/C	T	C	1220.57	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,150,1728
4	90245063	4:90245063_A/G	A	G	1266.26	PASS	.	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,175,2006
5	123879052	5:123879052_T/G	T	G	1051.57	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1444
5	123879053	5:123879053_G/A	G	A	1011.57	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1486
5	164613352	5:164613352_C/T	C	T	1446.55	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1342
5	21644868	5:21644868_C/G	C	G	1270.55	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1181
5	31108134	5:31108134_C/A	C	A	1049.57	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1299
5	36092112	5:36092112_C/T	C	T	688.57	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1288
5	44935917	5:44935917_T/A	T	A	845.61	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1142
5	86448538	5:86448538_C/G	C	G	580.57	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,165,1883
6	114262744	6:114262744_G/A	G	A	1100.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,135,1571
6	117717730	6:117717730_T/C	T	C	1031.58	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,150,1707
6	13908007	6:13908007_C/A	C	A	1046.35	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1065
6	149524348	6:149524348_G/T	G	T	811.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1324
6	161237739	6:161237739_A/G	A	G	823.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1192
6	164000726	6:164000726_G/T	G	T	1106.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1218
6	16845891	6:16845891_G/A	G	A	1061.57	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1244
6	170903067	6:170903067_C/T	C	T	965.57	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,120,1434
6	20604669	6:20604669_A/G	A	G	1320.57	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1495
6	31240964	6:31240964_T/C	T	C	680.57	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:81:0,81,949
6	35604627	6:35604627_C/A	C	A	1018.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,884
6	40620264	6:40620264_G/A	G	A	1103.57	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1545
6	43036751	6:43036751_C/G	C	G	743.56	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:57:0,57,659
6	48479830	6:48479830_A/G	A	G	642.69	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1534
6	48714760	6:48714760_A/C	A	C	707.54	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1070
6	55890274	6:55890274_A/G	A	G	513.55	PASS	.	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,171,1971
6	56789768	6:56789768_C/T	C	T	700.35	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1398
6	66001064	6:66001064_G/T	G	T	960.55	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1563
6	6744872	6:6744872_C/A	C	A	941.57	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1721
6	77516579	6:77516579_T/A	T	A	887.55	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1432
6	78072850	6:78072850_T/G	T	G	304.57	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1036
6	85564152	6:85564152_C/G	C	G	787.55	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1052
6	96468763	6:96468763_T/A	T	A	742.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:27:78:0,78,923
7	100879542	7:100879542_G/T	G	T	708.57	PASS	.	GT:AD:DP:GQ:PL	0/0:24,0:24:69:0,69,782
7	124097316	7:124097316_A/C	A	C	1005.56	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1059
7	149553418	7:149553418_C/T	C	T	957.56	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1149
7	156902006	7:156902006_G/C	G	C	764.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1150
7	29504719	7:29504719_C/A	C	A	1162.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1183
7	44675935	7:44675935_G/A	G	A	1128.89	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1146
7	83990924	7:83990924_A/C	A	C	709.55	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,150,1669
7	99271389	7:99271389_G/C	G	C	1196.58	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:96:0,96,1133
8	104187068	8:104187068_C/G	C	G	679.57	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1251
8	106168624	8:106168624_G/T	G	T	965.57	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1060
8	109058680	8:109058680_A/C	A	C	892.56	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1410
8	11462081	8:11462081_G/T	G	T	1148.57	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,802
8	128583370	8:128583370_G/A	G	A	807.46	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,129,1512
8	129642763	8:129642763_C/G	C	G	1243.57	PASS	.	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,1804
8	137053909	8:137053909_G/A	G	A	844.55	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1325
8	16468451	8:16468451_A/T	A	T	1001.53	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1431
8	25225715	8:25225715_G/C	G	C	975.32	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,958
8	25678444	8:25678444_C/A	C	A	820.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1197
8	47288883	8:47288883_C/T	C	T	956.57	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1506
8	5839792	8:5839792_G/A	G	A	782.57	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1224
8	64891496	8:64891496_A/G	A	G	886.56	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1176
8	74935213	8:74935213_G/A	G	A	1041.56	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,875
8	83013347	8:83013347_G/A	G	A	827.57	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1366
9	101478636	9:101478636_C/G	C	G	904.57	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1357
9	118647871	9:118647871_T/G	T	G	680.56	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1305
9	2120871	9:2120871_A/G	A	G	1061.98	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1196
9	22808047	9:22808047_T/G	T	G	784.55	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1181
9	24915104	9:24915104_C/A	C	A	676.57	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1744
9	29300960	9:29300960_G/A	G	A	979.55	PASS	.	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2251
9	74381648	9:74381648_G/T	G	T	1094.56	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,114,1332
10	101220890	10:101220890_G/T	G	T	804.57	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1509
10	1056380	10:1056380_T/G	T	G	739.57	PASS	.	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1148
10	110845147	10:110845147_G/A	G	A	569.57	PASS	.	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1642
10	111582010	10:111582010_C/T	C	T	1047.56	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:93:0,93,1069
10	116592687	10:116592687_G/C	G	C	1096.57	PASS	.	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1373
10	119748817	10:119748817_C/A	C	A	1241.56	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1337
10	16858922	10:16858922_T/G	T	G	1098.73	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,764
10	30938760	10:30938760_G/A	G	A	876.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:96:0,96,1081
10	4571896	10:4571896_A/G	A	G	700.02	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1080
10	68227809	10:68227809_T/G	T	G	759.57	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1268
10	68227832	10:68227832_A/C	A	C	870.57	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1453
10	75197910	10:75197910_A/G	A	G	1092.56	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,830
10	75388744	10:75388744_A/G	A	G	1292.62	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1148
10	75561780	10:75561780_T/G	T	G	421.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1086
10	78530918	10:78530918_G/A	G	A	868.57	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,108,1261
11	103868903	11:103868903_G/C	G	C	884.33	PASS	.	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2090
11	124890902	11:124890902_A/G	A	G	1151.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1503
11	28578048	11:28578048_T/G	T	G	110.09	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:72:0,72,768
11	38477060	11:38477060_A/C	A	C	173.55	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,117,1238
11	41262255	11:41262255_A/G	A	G	1263.17	PASS	.	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,1729
11	45220608	11:45220608_C/G	C	G	1199.56	PASS	.	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,126,1483
11	61589586	11:61589586_C/T	C	T	806.62	PASS	.	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,989
11	76538881	11:76538881_C/G	C	G	1013.56	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,105,1224
12	104367920	12:104367920_C/T	C	T	979.57	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1101
12	10939491	12:10939491_A/G	A	G	828.57	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,129,1468
12	117911948	12:117911948_C/T	C	T	810.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1165
12	130431556	12:130431556_C/A	C	A	885.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1208
12	130832741	12:130832741_T/A	T	A	799.55	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1471
12	22454969	12:22454969_A/G	A	G	975.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,138,1560
12	23184659	12:23184659_T/G	T	G	701.83	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,768
12	47308147	12:47308147_T/A	T	A	713.57	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,883
12	58129785	12:58129785_T/A	T	A	328.6	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1224
12	85362581	12:85362581_A/C	A	C	1155.57	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:50:99:0,144,1634
12	86274150	12:86274150_G/A	G	A	786.55	PASS	.	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,105,1213
12	88743911	12:88743911_C/T	C	T	632.57	PASS	.	GT:AD:DP:GQ:PL	0/0:28,0:28:78:0,78,911
12	90013303	12:90013303_C/T	C	T	745.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1389
12	90634362	12:90634362_C/T	C	T	965.62	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1181
13	102194305	13:102194305_T/G	T	G	958.55	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1271
13	108951886	13:108951886_C/T	C	T	794.57	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1134
13	112180700	13:112180700_G/A	G	A	934.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:72:0,72,833
13	25785101	13:25785101_C/T	C	T	835.57	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1061
13	38971364	13:38971364_G/A	G	A	782.73	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1049
13	50050713	13:50050713_C/G	C	G	783.55	PASS	.	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1406
13	55502390	13:55502390_G/C	G	C	728.57	PASS	.	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,1977
13	57771681	13:57771681_A/G	A	G	804.67	PASS	.	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,175,2058
13	59377594	13:59377594_T/C	T	C	1051.75	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1090
14	102368651	14:102368651_G/A	G	A	718.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:75:0,75,879
14	20603465	14:20603465_C/T	C	T	1191.57	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1180
14	35904559	14:35904559_G/C	G	C	510.33	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1468
14	55255527	14:55255527_C/T	C	T	866.56	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1043
14	73874830	14:73874830_G/A	G	A	828.57	PASS	.	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,684
14	75476496	14:75476496_C/T	C	T	100.79	PASS	.	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1044
14	97593116	14:97593116_C/T	C	T	942.57	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,1523
15	36845071	15:36845071_C/A	C	A	1122.57	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1462
15	43294546	15:43294546_G/A	G	A	588.57	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,934
15	60706041	15:60706041_T/C	T	C	844.57	PASS	.	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,135,1541
15	86376657	15:86376657_C/T	C	T	900.59	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,811
16	59730527	16:59730527_C/T	C	T	1196.57	PASS	.	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,123,1294
16	76828865	16:76828865_G/A	G	A	984.57	PASS	.	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,177,2066
17	11883879	17:11883879_A/G	A	G	167.56	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:63:0,63,744
17	31856983	17:31856983_C/T	C	T	947.57	PASS	.	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1660
17	54108694	17:54108694_G/T	G	T	1010.56	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,108,1263
17	58523958	17:58523958_G/T	G	T	1101.58	PASS	.	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1302
17	64857977	17:64857977_C/G	C	G	847.57	PASS	.	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,856
17	73059674	17:73059674_C/T	C	T	1011.55	PASS	.	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,905
18	14645639	18:14645639_C/G	C	G	991.57	PASS	.	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,165,1855
18	3934394	18:3934394_C/G	C	G	994.57	PASS	.	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1439
18	67583114	18:67583114_A/C	A	C	916.57	PASS	.	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,144,1698
18	71538752	18:71538752_C/A	C	A	1315.57	PASS	.	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,1794
18	7628489	18:7628489_C/T	C	T	873.55	PASS	.	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1139
18	76922757	18:76922757_A/G	A	G	1070.56	PASS	.	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,129,1511
19	18514248	19:18514248_G/A	G	A	743.56	PASS	.	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,725
19	39439869	19:39439869_G/A	G	A	543.1	PASS	.	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,764
19	40683604	19:40683604_C/A	C	A	1155.57	PASS	.	GT:AD:DP:GQ:PL	0/0:29,0:29:84:0,84,983
21	35595433	21:35595433_C/A	C	A	658.62	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,99,1051
22	17620868	22:17620868_C/A	C	A	675.69	PASS	.	GT:AD:DP:GQ:PL	0/0:23,0:23:66:0,66,723
22	24147984	22:24147984_G/T	G	T	924.57	PASS	.	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1044
22	26400075	22:26400075_A/G	A	G	596.35	PASS	.	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,126,1474
22	28802401	22:28802401_G/A	G	A	820.57	PASS	.	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,108,1163
22	40051541	22:40051541_G/A	G	A	1227.55	PASS	.	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1147