File: snv_SPARSE_reference.txt

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r-bioc-mutationalpatterns 3.8.1%2Bdfsg-1
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Type	SubType	background_signature	Signature 1	Signature 2	Signature 3	Signature 4	Signature 5	Signature 6	Signature 7	Signature 8	Signature 9
C>A	ACA	0.01169	0.004656	0.01886	0.0006496	0.00217	0.07315	0.0009283	0.003998	1.141e-06	0.005508
C>A	ACC	0.009828	0.002014	0.01062	2.291e-07	0.003792	0.04314	0.00203	0.005259	0	0.001679
C>A	ACG	0.001755	3.905e-09	0	0	0	0.01329	0	0	0	0
C>A	ACT	0.006355	0.001332	0.007895	0.006927	0.002595	0.0491	0.001119	0.003204	0	0.002293
C>G	ACA	0.01026	9.331e-10	0.01277	1.306e-09	0.002535	0.0171	0.006143	0.002945	8.68e-11	0.0007259
C>G	ACC	0.005537	6.692e-10	0.006715	6.902e-10	0.002018	0.009043	0.002942	0.002197	7.819e-11	0.0007279
C>G	ACG	0.001435	0	0.004208	0	0.0004941	0.004363	0.001498	0.0003331	0	7.552e-06
C>G	ACT	0.01002	1.417e-09	0.0119	1.529e-09	0.004088	0.01388	0.006942	0.003456	6.03e-11	0.002061
C>T	ACA	0.04003	0	0.01126	1.667e-14	0	0.001228	0.003032	0.04635	1.854e-05	0.001943
C>T	ACC	0.02064	0	0.003294	2.211e-07	0	0.001006	0	0.01534	0.02048	0.001679
C>T	ACG	0.004983	0	0.000493	0	6.936e-07	0.002778	6.797e-11	0.1921	0	7.674e-05
C>T	ACT	0.02525	0	0	-4.023e-17	0	0	0	0.02975	0.008314	0
T>A	ATA	0.007398	0.013	0.02299	0.001938	0.07962	0.0009006	0	0.005816	0.003509	0
T>A	ATC	0.007279	0.006142	0.006765	0.001678	0.01036	0.004699	0.001069	0.009562	5.913e-09	0.0009319
T>A	ATG	0.008904	0.0033	0.004952	7.395e-09	0.05956	0.006549	0.0005105	0.0008176	0.0003706	0.0002697
T>A	ATT	0.005169	0.01989	0.02111	0.03377	0.0214	0.002973	1.66e-08	0.02885	0.006949	0.004472
T>C	ATA	0.04972	0.08973	0	0	0.01672	1.059e-07	6.226e-14	0	2.147e-17	0
T>C	ATC	0.01418	0.0281	0.02007	0.0009982	0	0.0001933	0.0006943	0.0006396	0	0.0017
T>C	ATG	0.04128	0.04329	2.178e-10	2.231e-10	1.854e-10	3.832e-10	3.171e-11	2.028e-10	1.49e-12	1.198e-10
T>C	ATT	0.04253	0.04142	0.004597	0.007013	1.969e-09	1.944e-08	0.001695	3.715e-13	2.855e-14	0.004832
T>G	ATA	0.004043	0.006158	0.01781	0.01397	0.01098	0	0.0001444	0.003388	0.0004156	0.002201
T>G	ATC	0.002679	0.002685	0.004523	0.002961	0.001823	0.000165	0.0002745	0.001499	0.0001693	0.003964
T>G	ATG	0.008655	0	0.01661	1.032e-08	0.003314	0.001372	0.001041	0.0005949	0.001584	0.001843
T>G	ATT	0.005418	0.008581	0.01636	0.01021	1.356e-08	1.287e-12	3.061e-12	1.071e-07	8.638e-22	0.05466
C>A	CCA	0.006853	0.007265	0.002677	0.004476	8.164e-09	0.0859	2.797e-09	4.44e-09	0.005655	0.0005343
C>A	CCC	0.006485	0.008205	0	0	4.272e-08	0.0626	0	-1.154e-27	0	0
C>A	CCG	0.00326	4.449e-10	3.187e-10	2.806e-10	1.363e-10	0.0147	5.976e-11	9.242e-11	0.0004738	4.496e-11
C>A	CCT	0.005501	0	0	0.04334	0	0.0588	0	0.02363	0	5.648e-20
C>G	CCA	0.006793	0	0.005411	7.75e-26	0.001047	0.01205	0.006108	3.97e-26	0	0.0005161
C>G	CCC	0.009532	0	0.004073	0	7.588e-05	0.007355	0.002631	0	0	0.0002487
C>G	CCG	0.002454	0	0.004294	0	0	0.003238	0.001329	0	1.689e-05	0
C>G	CCT	0.009911	7.893e-13	0.008097	7.583e-13	0.002451	0.01416	0.008161	4.974e-09	4.761e-14	0.001073
C>T	CCA	0.01941	0.01586	0.0028	3.195e-11	1.24e-07	0.02187	4.014e-09	0.004551	0.06348	0.002356
C>T	CCC	0.01966	0.006033	0.002315	0	1.646e-07	0.01574	0	0.003698	0.07699	0.0005738
C>T	CCG	0.002902	0.001417	0.003852	0	2.165e-08	0.008009	5.623e-07	0.1157	0.006888	0.002772
C>T	CCT	0.02427	0.01641	0.01096	0	2.474e-07	0.0283	0	0.002993	0.06774	0.0004024
T>A	CTA	0.003189	2.134e-09	1.357e-09	5.176e-10	0.1266	2.261e-09	1.653e-10	1.67e-10	4.688e-11	9.262e-11
T>A	CTC	0.004932	0.01084	0.003359	4.199e-09	0.05214	0.01038	0.001005	5.544e-09	4.226e-10	0.009783
T>A	CTG	0.004067	3.198e-08	2.61e-09	9.589e-10	0.1502	0.006734	2.906e-10	3.134e-10	5.759e-11	0.000909
T>A	CTT	0.00332	0.009667	0.01023	0	0.0583	0.01847	0.0009456	8.631e-08	6.001e-11	0.03545
T>C	CTA	0.01344	0.03844	0.005568	4.579e-29	0.003317	0.00602	7.817e-07	0.002247	0	0.004774
T>C	CTC	0.01072	0.0398	0.05054	3.383e-09	1.683e-09	0.001721	7.007e-09	2.391e-09	5.193e-10	0.03477
T>C	CTG	0.02191	0.02914	0.008415	1.188e-09	4.12e-10	1.225e-09	2.752e-10	0.006213	1.029e-10	0.02143
T>C	CTT	0.01432	0.04923	0.01552	1.968e-14	6.989e-22	0.0003797	6.382e-21	3.533e-14	0.001136	0.1317
T>G	CTA	0.002691	0.002405	0.008832	0.01124	0.006948	0	1.077e-05	0.001382	0	0.002597
T>G	CTC	0.005062	0.003644	0.003803	8.06e-14	0.0001676	0.0009106	0.0004444	0.001572	0	0.0191
T>G	CTG	0.006058	0.002103	0.02176	0.002945	0.00708	0.002715	0.0007458	0.003663	0.0001806	0.008705
T>G	CTT	0.006687	7.871e-10	0	2.328e-10	4.415e-11	3.721e-09	4.403e-10	2.901e-09	0	0.339
C>A	GCA	0.01035	0	0	0.04121	0	0.04441	0	0.00464	0	0.009685
C>A	GCC	0.007374	0.004571	0	0.001748	0.0002723	0.03875	8.043e-15	0	0	0.0006121
C>A	GCG	0.002158	0.0001735	0	0	0	0.01154	0	0	0	1.557e-07
C>A	GCT	0.006141	0	0	0.04529	1.743e-23	0.03121	0	0.005822	0	0.003888
C>G	GCA	0.004446	3.899e-30	0.007386	0	0.0007651	0.009199	0.002231	1.332e-08	0	0.000279
C>G	GCC	0.005193	1.051e-09	0.007068	6.813e-10	0.001645	0.00894	0.001809	0.0006909	1.058e-10	0.0005413
C>G	GCG	0.001601	1.52e-10	0.007622	1.349e-10	1.225e-10	0.00194	0.000132	6.95e-11	0.0001614	4.065e-11
C>G	GCT	0.006947	3.165e-10	0.01059	6.777e-10	0.001449	0.009081	0.004489	0.0005643	3.895e-11	0.0007924
C>T	GCA	0.02055	0.01175	3.68e-09	1.505e-09	1.311e-09	0.005797	0.003045	0.03776	9.296e-11	8.783e-10
C>T	GCC	0.02304	0	0	0	0	0	0	0.04636	-2.074e-16	0
C>T	GCG	0.003393	0.006922	2.212e-09	0.0002541	0	7.328e-14	0	0.1611	0	0.0005777
C>T	GCT	0.0187	0.01021	0.007479	0.0008756	5.771e-10	0.005798	6.063e-15	0.03255	0.01221	1.315e-07
T>A	GTA	0.003201	0	0.002454	9.685e-09	0.05138	0.003069	6.567e-07	0.0004615	0.0001803	1.256e-17
T>A	GTC	0.002715	0.004235	0.003738	2.713e-08	0.01035	0.005241	0.0005919	0.003021	4.822e-13	0.002292
T>A	GTG	0.00358	0.003154	0.002367	0	0.02968	0.01088	0.000294	9.405e-07	0.0003032	0.0001233
T>A	GTT	0.002845	0.002865	0.009493	3.437e-08	0.01191	0.01177	0.00137	0.00474	0.0001222	0.007104
T>C	GTA	0.01433	0.05958	0	0	0	0.00109	5.34e-10	0.009925	0	0
T>C	GTC	0.007991	0.02605	0.01567	0.001759	3.985e-18	0.0006987	3.612e-05	0.005939	0	0.006383
T>C	GTG	0.01583	0.03317	0.001449	0	0	0	0	0.008682	-1.411e-25	0.002735
T>C	GTT	0.0136	0.04519	0.01287	1.113e-07	5.278e-14	0.003119	7.609e-16	0.007281	0.01106	0.008871
T>G	GTA	0.002834	5.207e-11	0.0448	3.124e-11	2.624e-11	3.389e-11	1.583e-11	1.854e-11	2.383e-11	2.14e-11
T>G	GTC	0.001968	1.193e-08	0.02943	0	0	0	0	0	0	0.00369
T>G	GTG	0.005323	1.505e-10	0.1165	9.598e-11	7.771e-11	1.42e-10	5.58e-11	6.24e-11	0.002134	6.454e-11
T>G	GTT	0.002466	0.001188	0.07099	0	0	0	0	2.536e-10	4.124e-08	0.07599
C>A	TCA	0.00639	0.003236	0.001578	0.1924	4.705e-07	0.02721	0.02366	0	1.037e-17	0
C>A	TCC	0.009247	0.006674	0	0.02699	3.598e-08	0.05282	0.01159	0	7.351e-12	0.001228
C>A	TCG	0.001802	0.0009031	0	0.009131	0	0.007687	0.001609	0	0	0.0003052
C>A	TCT	0.012	0	-1.419e-18	0.3935	0	0	-2.069e-19	0	0	0
C>G	TCA	0.009058	1.31e-09	1.179e-07	1.915e-09	3.786e-09	0.004896	0.2022	7.977e-10	4.263e-10	5.7e-10
C>G	TCC	0.007694	0	0.008212	0	0.002861	0.01494	0.04341	6.788e-15	0	1.553e-08
C>G	TCG	0.001861	0	0.001952	0	3.658e-10	0.002089	0.007667	0	0	0
C>G	TCT	0.01417	1.673e-21	0.01025	1.521e-21	6.312e-06	0.02116	0.2468	1.084e-19	3.153e-22	1.335e-16
C>T	TCA	0.02317	7.58e-07	0	6.411e-10	0	0	0.2593	2.416e-12	0.1879	6.632e-09
C>T	TCC	0.02417	0	4.66e-07	0	2.833e-19	1.816e-14	0	0	0.3189	0
C>T	TCG	0.002608	0	0	0.03033	0	0	0.01213	0.06762	0.06911	0
C>T	TCT	0.02356	0.008979	0.03206	0.002728	2.138e-13	0.01208	0.1224	0.008382	0.1176	0.002548
T>A	TTA	0.006947	0.004987	0.01504	0.02257	0.09681	0	4.133e-09	0.02152	0.001445	0.00633
T>A	TTC	0.003723	0.01452	0.003601	-9.61e-24	0.02622	0.008018	0.001206	-4.923e-24	0.0002126	0.001896
T>A	TTG	0.004351	0.003649	0.001443	0.004291	0.06906	4.467e-08	1.549e-14	1.701e-14	1.666e-05	0.0001365
T>A	TTT	0.00907	0.01473	0.02938	0.003412	0.04356	0.01025	0.0002454	0.01287	0.007691	0.01236
T>C	TTA	0.01882	0.06776	1.226e-06	4.011e-09	0.005428	0.005015	1.563e-09	0.001738	0.003461	0.002501
T>C	TTC	0.009378	0.04045	0.03721	0.001168	5.469e-11	0.002095	0.0003288	0.008105	0.0002436	0.006736
T>C	TTG	0.01311	0.03448	0.001327	1.96e-07	0	0.0002102	0	0.003982	0.0005457	0.003156
T>C	TTT	0.01995	0.06064	0.0217	0.004146	0	0	-2.034e-25	0.0173	0.002227	0.01281
T>G	TTA	0.005454	0.004215	0.0204	0.02509	0.01033	0	8.737e-05	0.001167	0	0.004344
T>G	TTC	0.007078	0.00156	0.007274	0.003548	0.002152	4.714e-13	0.0005855	0.0004639	3.236e-07	0.007112
T>G	TTG	0.007457	0.0003731	0.01745	0.001218	0.006334	0.004039	0.001286	0.004724	0.0001486	0.004415
T>G	TTT	0.01392	0.01303	0.04491	0.04629	4.57e-12	0	6.39e-21	0.000791	3.394e-13	0.1023