1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
Package: rtracklayer
Title: R interface to genome annotation files and the UCSC genome
browser
Version: 1.66.0
Author: Michael Lawrence, Vince Carey, Robert Gentleman
Depends: R (>= 3.5.0), methods, GenomicRanges (>= 1.37.2)
Imports: XML (>= 1.98-0), BiocGenerics (>= 0.35.3), S4Vectors (>=
0.23.18), IRanges (>= 2.13.13), XVector (>= 0.19.7),
GenomeInfoDb (>= 1.15.2), Biostrings (>= 2.47.6), zlibbioc,
curl, httr, Rsamtools (>= 1.31.2), GenomicAlignments (>=
1.15.6), BiocIO, tools, restfulr (>= 0.0.13)
Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
genefilter, limma, org.Hs.eg.db, hgu133plus2.db,
GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit
LinkingTo: S4Vectors, IRanges, XVector
Description: Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.
Maintainer: Michael Lawrence <michafla@gene.com>
License: Artistic-2.0 + file LICENSE
Collate: io.R web.R ranges.R trackDb.R browser.R ucsc.R readGFF.R gff.R
bed.R wig.R utils.R bigWig.R bigBed.R chain.R quickload.R
trackhub.R twobit.R fasta.R tabix.R bam.R trackTable.R index.R
test_rtracklayer_package.R ncbi.R igv.R zzz.R
biocViews: Annotation,Visualization,DataImport
git_url: https://git.bioconductor.org/packages/rtracklayer
git_branch: RELEASE_3_20
git_last_commit: d81035b
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: yes
Packaged: 2024-10-30 02:35:56 UTC; biocbuild
|
