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Package: scran
Version: 1.26.2
Date: 2022-09-08
Title: Methods for Single-Cell RNA-Seq Data Analysis
Description:
Implements miscellaneous functions for interpretation of single-cell RNA-seq data.
Methods are provided for assignment of cell cycle phase, detection of highly
variable and significantly correlated genes, identification of marker genes,
and other common tasks in routine single-cell analysis workflows.
Authors@R:
c(person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
person("Karsten", "Bach", role = "aut"),
person("Jong Kyoung", "Kim", role = "ctb"),
person("Antonio", "Scialdone", role="ctb"))
Depends: SingleCellExperiment, scuttle
Imports: SummarizedExperiment, S4Vectors, BiocGenerics, BiocParallel,
Rcpp, stats, methods, utils, Matrix, edgeR, limma, igraph,
statmod, DelayedArray, DelayedMatrixStats, BiocSingular,
bluster, metapod, dqrng, beachmat
Suggests: testthat, BiocStyle, knitr, rmarkdown, HDF5Array, scRNAseq,
dynamicTreeCut, ResidualMatrix, ScaledMatrix, DESeq2, monocle,
Biobase, pheatmap, scater
biocViews: ImmunoOncology, Normalization, Sequencing, RNASeq, Software,
GeneExpression, Transcriptomics, SingleCell, Clustering
LinkingTo: Rcpp, beachmat, BH, dqrng, scuttle
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/scran
git_branch: RELEASE_3_16
git_last_commit: 0cdaef6
git_last_commit_date: 2023-01-19
Date/Publication: 2023-01-19
Packaged: 2023-01-19 23:02:18 UTC; biocbuild
Author: Aaron Lun [aut, cre],
Karsten Bach [aut],
Jong Kyoung Kim [ctb],
Antonio Scialdone [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
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