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5f7cedf81f0cd3ebe6fd924318c193c1 *DESCRIPTION
5a775eb7fb524079094b2b6ebd6503bb *NAMESPACE
b3f63381a33c5f57630f89809168d9a1 *R/RcppExports.R
a538385905e3b75ac6c2571b713d1aac *R/addPerCellQCMetrics.R
351b646ddf5c40b03cb5a50b9276718b *R/aggregateAcrossCells.R
cd393d958b2c56a95930da2e9e1e7dad *R/aggregateAcrossFeatures.R
fd2ea645fef7b6bc1a567e13a5fee5cd *R/calculateAverage.R
a829625777aa1b63344c48ea62073dd8 *R/calculateCPM.R
b8f9a9e66b106acb549887cd016cd90a *R/calculateFPKM.R
80ef7f5e4be1d14119c82e5d8545db9a *R/calculateTPM.R
c459ba72cd345b8dd766fd42d1a51d0d *R/cleanSizeFactors.R
4649db05f1ca0f7c6b3f4d242779a33f *R/computeSpikeFactors.R
c165c9e62ca7a53640a678946adf5109 *R/correctGroupSummary.R
3233c32b01fd5918e1a651640a955e1f *R/downsampleBatches.R
848b68f256e43d8426ad462b20ce96b3 *R/downsampleMatrix.R
b500b14b79ed36e64dcc10c5e0f69371 *R/fitLinearModel.R
d071d0d3a724f097eb227585b5e4c761 *R/geometricSizeFactors.R
126048e02bbb641780fb1b7e8ce5a800 *R/isOutlier.R
c377d809949b971ac2a932885a5e1454 *R/librarySizeFactors.R
f27ed75c2f9786c17d08b9a86e66aeaf *R/logNormCounts.R
8d537abcce4d79fb21320a28a2bbdbc7 *R/makePerCellDF.R
33736ed9b203237bcd82cf551fe3d801 *R/makePerFeatureDF.R
7216c583e777d9ad66c0a127f5a35751 *R/medianSizeFactors.R
94542da45050cd3a186124aad4894a58 *R/mockSCE.R
9842da4c2a6dda275027871ff589426a *R/normalizeCounts.R
efcdb3ed1760206e4a64982f4a0309b7 *R/numDetectedAcrossCells.R
4b6f22f8c1bba7abdcb604b30cce1b0b *R/numDetectedAcrossFeatures.R
38dbf70e07834b67bf7e0f4747b0698d *R/perCellQCFilters.R
9c69119475e887665b546b97d90c5358 *R/perCellQCMetrics.R
c4eaa909862a48bf5ce528b6c56c4ff9 *R/perFeatureQCMetrics.R
803e6970d9ea28b4a298e9a1644935b9 *R/pooledSizeFactors.R
0da739102cd4f6bd1af3ded6278c285e *R/quickPerCellQC.R
7b2ea2f04609e131d71468a7f8f62cd4 *R/readSparseCounts.R
f893bf4f68c59e7bb5c9cb15162d7835 *R/scuttle-pkg.R
6183f6e28624e3c1131e29869e2fb037 *R/sumCountsAcrossCells.R
64e889dc888cebb980a67c532e34f63a *R/sumCountsAcrossFeatures.R
7fe89d018cffad2ed6ba66465882661e *R/summarizeAssayByGroup.R
a91c76958dc565bf8023c7a418823445 *R/uniquifyDataFrameByGroup.R
a45a679d8ba5a0cd435490d40beda249 *R/uniquifyFeatureNames.R
36968e79d3098956e88f07ab4a8f0196 *R/utils_other.R
7d8abe45729df864de38198acaa0012e *R/utils_parallel.R
fa61636d9abdec55cb138fa3e3636ae3 *R/utils_subset.R
d557f881ce8c6d4ae7e7979b16e460cb *R/whichNonZero.R
68b4a7626c549f0cc655473641a906d0 *build/vignette.rds
4a45c71799006d8754b805cda43ab5a6 *inst/CITATION
9cf43951481d19f6c9dc40cce1996a51 *inst/NEWS.Rd
2dc97ab71ad75e0d6cd6021f3de305b5 *inst/doc/misc.R
cc72776197b1bff59974d25241f71896 *inst/doc/misc.Rmd
0ab971005496e3dbc05711bae219729e *inst/doc/misc.html
74e6b4eac30e06b84f47188497032269 *inst/doc/norm.R
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be615f52b357cebbbc81c389315b2834 *inst/doc/norm.html
05e9c6bd50e92e06a45acd352535b26c *inst/doc/qc.R
86b7639e0133ec453787427f30d087a0 *inst/doc/qc.Rmd
63e88e7aefec6a62b5b38a781739d71d *inst/doc/qc.html
c5d0e92697c5c0bae2bdfb452156d4a9 *inst/include/scuttle/downsample_vector.h
905ef5817b1659347aacf4d54ab0eebe *inst/include/scuttle/linear_model_fit.h
be8d2de3eaea2db11e2d20396749cee6 *man/addPerCellQCMetrics.Rd
e0052c018faabae2e89c1512523d0401 *man/aggregateAcrossCells.Rd
6482733d4c37576ab1dffbf2dbe66242 *man/aggregateAcrossFeatures.Rd
f973f655aa0b045a173467cd94f58b89 *man/calculateAverage.Rd
4dcc27d33dfea45cb11fdcc6bdfb2e01 *man/calculateCPM.Rd
bf73b9144195a638f8bdd2e643382fef *man/calculateFPKM.Rd
47872eae8e055c6ba895b52ebf426da9 *man/calculateTPM.Rd
d367bbd5a2572f3eec74d903014718e4 *man/cleanSizeFactors.Rd
970973e21c5beee8f2d1b59871adc276 *man/computePooledFactors.Rd
5a62594dc1e37e36243bb0aa0cc765f5 *man/computeSpikeFactors.Rd
b20c3abb5b4059d82b00c47304e86ad7 *man/correctGroupSummary.Rd
36f01086c246f9eb5fd17ea44fdd8cfa *man/downsampleBatches.Rd
eb734ecfbd37025bf0e19d62da3f5e2c *man/downsampleMatrix.Rd
de6dc6b9877654f07097cd9cf221ff1d *man/fitLinearModel.Rd
149dbaf152d428ea5fb7e69e27c1e005 *man/geometricSizeFactors.Rd
4aa5849cdd73ab4314368459465d2463 *man/isOutlier.Rd
12fdc0dfc0d93185392308bbf24d5cd0 *man/librarySizeFactors.Rd
cf237a9f5dfae9cbaac83631f9464e99 *man/logNormCounts.Rd
6befd455f043dbabc8ae1020a8f2b1c0 *man/makePerCellDF.Rd
6dfbd973253b5da6a08ec593afffe4d1 *man/makePerFeatureDF.Rd
d6c47fef8578bf99edae6c654255db30 *man/medianSizeFactors.Rd
5bc0a21546066393ba4de03a536c7810 *man/mockSCE.Rd
857986b3f9f14d8e8394dc1c39aa781e *man/normalizeCounts.Rd
024183351866274fdce34c9154d2b339 *man/numDetectedAcrossCells.Rd
ca593a175dbf5a25c71d7ed82767dcbc *man/numDetectedAcrossFeatures.Rd
9edee032a60727c61608b0212bbdcb73 *man/perCellQCFilters.Rd
f736f069663eaf7acf6441da2b980de7 *man/perCellQCMetrics.Rd
fe96c5e888fc9621ad25faf8c2003633 *man/perFeatureQCMetrics.Rd
58480aed2098d82e4fce7868c8aef10c *man/quickPerCellQC.Rd
0a2b8561f29f9853c2893254caa5fc70 *man/readSparseCounts.Rd
3f905d7b570a1b3fd9bc01b6bd5e75f8 *man/reexports.Rd
3e70aac262251532a1ce9e1347c199c0 *man/scuttle-pkg.Rd
9c20b4baadf4d315a21eba0aa3555d74 *man/scuttle-utils.Rd
f3fdc63088b5c5567e0477a5b4899612 *man/sumCountsAcrossCells.Rd
7bbe034cbd592279dbcf877d2ea59e53 *man/sumCountsAcrossFeatures.Rd
01626d8d0da1822947d7f07d0161a01d *man/summarizeAssayByGroup.Rd
9d9b9b7a5c228a32905230491e384462 *man/uniquifyDataFrameByGroup.Rd
6e5fe4521784231c6e3041a6ef2d2315 *man/uniquifyFeatureNames.Rd
eb1358044be01eb2799bc917809f0f21 *src/Makevars
3bdce52b8cded0893c349d09bec50a45 *src/RcppExports.cpp
6d73031181c01abc1bab4190115db3ff *src/cumulative_prop.cpp
a503fe853166d968422c5a1a26bb8322 *src/downsample_counts.cpp
5d99e281d092af98c6db07c3f56d0b11 *src/fit_linear_model.cpp
110a36bca83bea3bb445885a87cba26c *src/pool_size_factors.cpp
5a9ec7607853ee1203e1027511653568 *src/sparse_summarize.cpp
7d58a4dd7f900d00460caca39e09d945 *src/sum_counts.cpp
af4ea617775903e612d41d53eac2216f *src/utils.cpp
2fe192cfbb6664721817aac54b35257c *src/utils.h
414a02a9fdd9406439eee8549a926fa8 *tests/testthat.R
e54595f7974eee4c3115e89637ce8508 *tests/testthat/setup.R
0cc0f8a7dda8a8b2d3c4a30ec8811f2c *tests/testthat/test-calc-ave.R
a7b7170ce8e62601718e335c23c4e73b *tests/testthat/test-calc-cpm.R
0d7aec99552270afdef45f09d6b3f44e *tests/testthat/test-clean-size-factors.R
89ae6502a587cc8ace82a0a58e6ceedc *tests/testthat/test-correct-summary.R
cdd95710eb2a7beb2dae19d0e7d1a70b *tests/testthat/test-downsample.R
97884e42d86cb34d8d24aaa288c5743a *tests/testthat/test-feat-proc.R
813d7afa236e291af76ab4b8b1281868 *tests/testthat/test-linear-model.R
0b5f08ea048d35bd4965c7cfdeafaea4 *tests/testthat/test-load-data.R
5ab749f3280eb1db7df72d5e1cd5abb8 *tests/testthat/test-make-df.R
5be348b66f0a0e6cd691a48d7a8269a7 *tests/testthat/test-norm.R
96c01a26008499ba346d089faaa88885 *tests/testthat/test-pool-size-factors.R
0d8656ed96e4c3f761ae579c71773263 *tests/testthat/test-qc-calc.R
0b52ed77215eee4319e1990a91bc5542 *tests/testthat/test-qc-filters.R
8b7c119a31b8b7d8a08a8b0cc3b6a52b *tests/testthat/test-qc-outlier.R
4dd2844859238e56fa09db95714a623e *tests/testthat/test-size-factors.R
ffb5b102ddf7d6afdbd65f4d979985ba *tests/testthat/test-spike-size-factors.R
806bb9ab253dde8d62b4fef2ec6abfe6 *tests/testthat/test-sum-across-cells.R
4832b63f90520bcf75b81920b7b68806 *tests/testthat/test-sum-across-feat.R
dcf9fe37d660a34c4f79b6ad1c37fee9 *tests/testthat/test-utils.R
cc72776197b1bff59974d25241f71896 *vignettes/misc.Rmd
f1a6479994e235cc3ffa03b0fc7c4b69 *vignettes/norm.Rmd
86b7639e0133ec453787427f30d087a0 *vignettes/qc.Rmd
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