File: NAMESPACE

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r-bioc-singler 1.4.1%2Bds-1
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# Generated by roxygen2: do not edit by hand

export(.mockRefData)
export(.mockTestData)
export(BlueprintEncodeData)
export(DatabaseImmuneCellExpressionData)
export(HumanPrimaryCellAtlasData)
export(ImmGenData)
export(MonacoImmuneData)
export(MouseRNAseqData)
export(NovershternHematopoieticData)
export(SingleR)
export(aggregateReference)
export(classifySingleR)
export(combineCommonResults)
export(combineRecomputedResults)
export(getClassicMarkers)
export(getDeltaFromMedian)
export(matchReferences)
export(plotDeltaDistribution)
export(plotScoreDistribution)
export(plotScoreHeatmap)
export(pruneScores)
export(trainSingleR)
importClassesFrom(BiocParallel,MulticoreParam)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,List)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,bndistance)
importFrom(BiocNeighbors,buildIndex)
importFrom(BiocNeighbors,queryKNN)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpisup)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(BiocSingular,bsparam)
importFrom(BiocSingular,runPCA)
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,colsum)
importFrom(DelayedArray,currentViewport)
importFrom(DelayedArray,getAutoBPPARAM)
importFrom(DelayedArray,is_sparse)
importFrom(DelayedArray,makeNindexFromArrayViewport)
importFrom(DelayedArray,rowMaxs)
importFrom(DelayedArray,rowMins)
importFrom(DelayedArray,setAutoBPPARAM)
importFrom(DelayedArray,sweep)
importFrom(DelayedMatrixStats,colRanks)
importFrom(DelayedMatrixStats,rowAnyNAs)
importFrom(DelayedMatrixStats,rowMedians)
importFrom(DelayedMatrixStats,rowSds)
importFrom(DelayedMatrixStats,rowVars)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,selfmatch)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(beachmat,colBlockApply)
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,kmeans)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(utils,head)
useDynLib(SingleR)